Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1e05
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    29   0.68 
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    29   0.90 
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    27   2.7  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.3  

>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +3

Query: 555 TQYPDLRLNWFFLIDDSQQYTFNKLVQTRKTNVFEKNNRRSIQDFRLKYKSVNLT 719
           T YP L LN  +  ++    + + L QT+    F+ +NRR + D  L Y+S N +
Sbjct: 113 TDYPYLLLNVSYDTEERVHISISDLNQTQ----FQLSNRRDVWDAPLFYRSSNFS 163


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 255 GPQAPLTTVSPGWTIASGRKHSWLN-RWPELFSACWMTFILLGISLLVFYAIGISV 419
           GPQ P T V   + I + +KH + N  WP L  A ++ F ++  S+       +S+
Sbjct: 131 GPQNPRTIVGLNYVIDTLKKHVFNNLLWPSLDKAGFINFQVVEPSMYTSLTTTLSI 186


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 330 RWPELFSACWMTFILLGISLLVFYAI-GISVYRHQGL-IFVNCNDTRPY 470
           RWPE+F+A       LG+++++F  + G + Y + G  +F       PY
Sbjct: 223 RWPEIFNANIRYRTFLGMAVMMFQQLTGANYYFYYGTQVFRGTGMDSPY 271


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 594 IDDSQQYTFNKLVQTRKTNVFEKNNRRSIQDFRLKYK 704
           ID  +QY+F  L Q  + NVF K    S++D + K K
Sbjct: 526 IDSLEQYSFEVLQQLSQLNVFTK---ASLEDKQKKEK 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,183,278
Number of Sequences: 5004
Number of extensions: 69281
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)