Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1e05
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0123 - 20997498-20997512,20998015-20998100,20999066-209991...    32   0.54 
06_01_0583 - 4174037-4174114,4174215-4174352,4174447-4174555,417...    31   0.94 
11_06_0365 - 22742886-22744223                                         29   3.8  
11_06_0362 - 22723104-22724441                                         29   3.8  
04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581     29   5.0  
12_02_0287 - 16851369-16851998                                         28   8.7  
12_02_0286 - 16845594-16846223                                         28   8.7  
04_04_0848 - 28677545-28677635,28677760-28677887,28678020-286781...    28   8.7  

>09_06_0123 -
           20997498-20997512,20998015-20998100,20999066-20999198,
           20999264-20999341,21000130-21000216,21001164-21001254,
           21001338-21001488,21001567-21002296,21002404-21002820
          Length = 595

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -3

Query: 361 IQQAENNSGHRLSQECFLPEAMVHPGDTVVSGA*GPTQESPPPAST 224
           ++   + S    S++  +P    HP    +SG   PT   PPP +T
Sbjct: 127 LKSLSDGSAPSASEDLIVPSVQPHPVANPISGGSNPTSSPPPPNAT 172


>06_01_0583 -
           4174037-4174114,4174215-4174352,4174447-4174555,
           4174857-4174945,4175218-4175307,4175570-4175653,
           4177508-4177759
          Length = 279

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 210 YPLLKVDAGGGDSCVGPQAPLTTVSPGWTIASGRKH-SWLNRWPELFSACW 359
           Y  LK D+GGG     P  P+  +  G   AS R+   WL +     S+ W
Sbjct: 122 YTPLKEDSGGGSESATPPTPIEPIHDGKIRASSREQIKWLEQSIAATSSNW 172


>11_06_0365 - 22742886-22744223
          Length = 445

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = +3

Query: 489 QIVSAETYFPFSSYYGYLSNM---VTQYPDLRLNWFFLIDDSQQYTFNKLVQTRKTNVFE 659
           ++V  ++    + + GY S M      YP L+ N  ++ DDS +Y +      R+  +++
Sbjct: 354 KLVKMKSLDDHALFLGYNSTMCISTKDYPMLKPNCAYITDDSSEYVYMYKNSWREIGIWD 413

Query: 660 KNNRRSIQDF 689
             + +S+Q F
Sbjct: 414 MTS-KSLQSF 422


>11_06_0362 - 22723104-22724441
          Length = 445

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = +3

Query: 489 QIVSAETYFPFSSYYGYLSNM---VTQYPDLRLNWFFLIDDSQQYTFNKLVQTRKTNVFE 659
           ++V  ++    + + GY S M      YP L+ N  ++ DDS +Y +      R+  +++
Sbjct: 354 KLVKMKSLDDHALFLGYNSTMCISTKDYPMLKPNCAYITDDSSEYVYMYKNSWREIGIWD 413

Query: 660 KNNRRSIQDF 689
             + +S+Q F
Sbjct: 414 MTS-KSLQSF 422


>04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581
          Length = 521

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +3

Query: 228 DAGGGDSCVGPQAPLTTVSPGWTIASGRKHSWLNRWPELFSACWMTFILLGISLLVFYA- 404
           D   GD C G  A   T   GW  ASGR  S ++ W      C   +  +G+   +F+A 
Sbjct: 76  DGRCGDRCAGAGAAAGT---GWEWASGRASSTVSEWG---LVCGERY-KVGLVQAIFFAG 128

Query: 405 --IGISVYRH 428
             IG  V+ H
Sbjct: 129 CMIGAGVFGH 138


>12_02_0287 - 16851369-16851998
          Length = 209

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 228 DAGGGDSCVGPQAPLTTVSPGWTIASGRKHSWLNRW 335
           DAGGGD   G +      + G     GR+ + + RW
Sbjct: 161 DAGGGDGAAGRRTGKAVGAAGGVQRHGRERATVGRW 196


>12_02_0286 - 16845594-16846223
          Length = 209

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 228 DAGGGDSCVGPQAPLTTVSPGWTIASGRKHSWLNRW 335
           DAGGGD   G +      + G     GR+ + + RW
Sbjct: 161 DAGGGDGAAGRRTGKAVGAAGGVQRHGRERATVGRW 196


>04_04_0848 -
           28677545-28677635,28677760-28677887,28678020-28678126,
           28678242-28678320,28678426-28678515,28678603-28678854,
           28680351-28680497,28680711-28681035,28681177-28681406
          Length = 482

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 378 GISLLVFYAIGISVYRHQGLIFVNCNDTRPYSQVFYHQIVSAETYFPFSSYY 533
           G+S ++F  +   +    GL   N  + R   Q F+  +VS   YFP +S+Y
Sbjct: 182 GVSDMIFDLVAKKLI---GLDVTNSRELRKNFQDFFQGMVSFPIYFPGTSFY 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,934,086
Number of Sequences: 37544
Number of extensions: 442708
Number of successful extensions: 1065
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)