Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1e05
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical pr...    31   0.64 
AF016435-3|AAB65879.1|  438|Caenorhabditis elegans Hypothetical ...    29   3.4  

>Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical protein
            C13B4.1a protein.
          Length = 1010

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +3

Query: 204  ENYPLLKVDAGGGDSCVGPQAPLTTVSPGWTIASGRKHSWLNRWPE-LFSACWMTFILLG 380
            E+ P+        ++    Q+P T+      + + +K  W+NR+ E +     + FI +G
Sbjct: 939  EDIPMRPTSKTESETTWAIQSPPTSTDSNREVPAEKKRLWVNRFREFVVYGAVLIFIAVG 998

Query: 381  ISLLVFYAIGIS 416
              L VF+  G S
Sbjct: 999  TILSVFFGTGFS 1010


>AF016435-3|AAB65879.1|  438|Caenorhabditis elegans Hypothetical
           protein F59D6.4 protein.
          Length = 438

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 138 NKTLSAIFVFRMVDHDPGLKQEENYPLLKVD 230
           N  LS ++VFR  D+     Q +N PLLKVD
Sbjct: 49  NSMLSGLYVFRAGDNQECDFQIKNNPLLKVD 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,421,178
Number of Sequences: 27780
Number of extensions: 388207
Number of successful extensions: 944
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)