Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1e03
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0182 - 13930436-13931245,13931348-13931627,13931788-139323...    30   1.8  
04_04_0338 + 24509698-24510042,24510373-24510490,24510539-245106...    28   9.4  

>08_02_0182 -
           13930436-13931245,13931348-13931627,13931788-13932324,
           13932482-13932579,13932678-13933118
          Length = 721

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 236 IVFGVIRPQRHFAGLGNF*ERRYIFII 156
           I++GV+ P R F  LGN+ +  Y F++
Sbjct: 563 IIWGVVGPLRMFGRLGNYWQMNYFFLV 589


>04_04_0338 +
           24509698-24510042,24510373-24510490,24510539-24510642,
           24510823-24511491
          Length = 411

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/74 (24%), Positives = 32/74 (43%)
 Frame = +3

Query: 417 LFESTAYLIKGFFGAGILNVHVAYMFAGLWTSLVVTFVMGGIICRCMMLLVKSAHKMYVL 596
           ++ ++A++I    G+G+L++       G      V  + G +I  C +LLV+        
Sbjct: 36  MWTASAHIITAVIGSGVLSLAWGVAQLGWVAGPAVMLLFGAVIYCCSVLLVECYRTGDPY 95

Query: 597 LRVPRLTYADLVEA 638
                 TY D V A
Sbjct: 96  TGQRNRTYMDAVRA 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,903,218
Number of Sequences: 37544
Number of extensions: 340666
Number of successful extensions: 789
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)