Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1e01
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    28   1.1  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    28   1.1  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    27   2.5  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    27   3.3  
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    26   4.4  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    26   5.8  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   7.7  

>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
 Frame = -3

Query: 649 LDSCMLDKWLIHISLAGLDMGM----GTGLGK----GRMVRKVRTDHRDHRDHKGP 506
           L  C LD   +H+S +G+        G  + +    G+M+ +   ++ D+RDHKGP
Sbjct: 281 LPVCCLDPHFLHLSFSGVLFIFLFVEGIRILRLKPFGKMIHEFLWEYTDNRDHKGP 336


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 631 DKWLIHISLAGLDMGMGTGLG 569
           DKW I + LAG   G+G GLG
Sbjct: 88  DKWDIMLQLAGTITGIGAGLG 108


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 519 SLWSLWSVRTLRTMRPLP 572
           S   LW +RT+ T+RPLP
Sbjct: 311 SALKLWDLRTVHTVRPLP 328


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 448 DRKARMDHKARMARTEDTVQGTDRTAHRDHMDIRN*DSPLSSRPSS 311
           D   +++ +A M+++ED +Q    T      D+ N +SP S   +S
Sbjct: 56  DLNRKLNLRAMMSKSEDNLQILKETTSGSSSDLLNIESPASPAEAS 101


>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 248 DASLRAANNGAVLFLVPAEVKARPLMHFKNDTFFVKTAFLRTKA 117
           D  L  A NGA + ++PA V  +P M  ++D F    + +R  A
Sbjct: 88  DKGLEKALNGADVVIIPAGVPRKPGM-TRDDLFATNASIVRDLA 130


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +3

Query: 390 WTVSSVRAMRALWSMRALRSVSIPLPVWSMRALWALPIPGPLWSLWSLWSVRTLRTMRPL 569
           W V + +   AL ++ A   V + +  W+ R    L   G    +WS+W +R+L++   +
Sbjct: 319 WDVRNKQKTSAL-TVNAHPGVDVNVLSWNTRVPNLLAT-GADNGVWSVWDLRSLKSSSSV 376

Query: 570 PKPV 581
             PV
Sbjct: 377 ATPV 380


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 62  NTKFSSNKPASKQNQRKQ 115
           N KFSSN P  KQ ++KQ
Sbjct: 275 NCKFSSNGPKIKQAKKKQ 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,888
Number of Sequences: 5004
Number of extensions: 34386
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)