Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1d24
         (540 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ277916-1|CAB98128.1|  257|Homo sapiens LIM-homeobox 9 protein.       31   2.6  
BC059402-1|AAH59402.1|  842|Homo sapiens round spermatid basic p...    25   3.3  
U76362-1|AAB53971.1|  560|Homo sapiens retinal glutamate transpo...    31   3.4  
BC017242-1|AAH17242.1|  560|Homo sapiens solute carrier family 1...    31   3.4  
BC012119-1|AAH12119.1|  560|Homo sapiens solute carrier family 1...    31   3.4  
AL445183-7|CAH72594.1|  560|Homo sapiens solute carrier family 1...    31   3.4  
U91930-1|AAD03777.1| 1112|Homo sapiens AP-3 complex delta subuni...    30   6.0  
AC005545-2|AAC34214.1| 1079|Homo sapiens AP-3 complex delta subu...    30   6.0  
AB208804-1|BAD92041.1| 1284|Homo sapiens Adapter-related protein...    30   6.0  

>AJ277916-1|CAB98128.1|  257|Homo sapiens LIM-homeobox 9 protein.
          Length = 257

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 184 YGVEQLARCNLGLSAGTKL-VHETDSLARESAPDGRSKTTSSRTESF 321
           + V++ ARC+LG+SA      +E D L R+  P   S+ T     SF
Sbjct: 70  FSVQRCARCHLGISASESCNENEADHLDRDQQPYPPSQKTKRMRTSF 116


>BC059402-1|AAH59402.1|  842|Homo sapiens round spermatid basic
           protein 1-like protein.
          Length = 842

 Score = 24.6 bits (51), Expect(2) = 3.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 107 ATSPTRRPKRCRDKERER 160
           A + +RRPK  R+KER R
Sbjct: 153 ANAKSRRPKEKREKERRR 170



 Score = 24.6 bits (51), Expect(2) = 3.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 140 RDKEREREAEKFNVNTEL 193
           RDKE+ERE +K  V  E+
Sbjct: 205 RDKEKEREKKKHKVMNEI 222


>U76362-1|AAB53971.1|  560|Homo sapiens retinal glutamate
           transporter EAAT5 protein.
          Length = 560

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 340 SISQLH*SSQSGC*LSWNAHQGRTLAPSCPSHVPV 236
           S+ ++  + Q+GC  S       TL P+CP HVPV
Sbjct: 499 SLQEIVAAQQNGCVKSVAEASELTLGPTCPHHVPV 533


>BC017242-1|AAH17242.1|  560|Homo sapiens solute carrier family 1
           (glutamate transporter), member 7 protein.
          Length = 560

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 340 SISQLH*SSQSGC*LSWNAHQGRTLAPSCPSHVPV 236
           S+ ++  + Q+GC  S       TL P+CP HVPV
Sbjct: 499 SLQEIVAAQQNGCVKSVAEASELTLGPTCPHHVPV 533


>BC012119-1|AAH12119.1|  560|Homo sapiens solute carrier family 1
           (glutamate transporter), member 7 protein.
          Length = 560

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 340 SISQLH*SSQSGC*LSWNAHQGRTLAPSCPSHVPV 236
           S+ ++  + Q+GC  S       TL P+CP HVPV
Sbjct: 499 SLQEIVAAQQNGCVKSVAEASELTLGPTCPHHVPV 533


>AL445183-7|CAH72594.1|  560|Homo sapiens solute carrier family 1
           (glutamate transporter), member 7 protein.
          Length = 560

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 340 SISQLH*SSQSGC*LSWNAHQGRTLAPSCPSHVPV 236
           S+ ++  + Q+GC  S       TL P+CP HVPV
Sbjct: 499 SLQEIVAAQQNGCVKSVAEASELTLGPTCPHHVPV 533


>U91930-1|AAD03777.1| 1112|Homo sapiens AP-3 complex delta subunit
           protein.
          Length = 1112

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 104 RATSPTRRPKRCRDKER--EREAEKFNVNTELNNWLDVTLACQPAP 235
           ++  P ++ K+ ++KER  E++ EK     +L+ WL  T    PAP
Sbjct: 749 KSKKPKKKEKKHKEKERDKEKKKEKEKKAEDLDFWLSTTPPPAPAP 794


>AC005545-2|AAC34214.1| 1079|Homo sapiens AP-3 complex delta
           subunit, partial CDS protein.
          Length = 1079

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 104 RATSPTRRPKRCRDKER--EREAEKFNVNTELNNWLDVTLACQPAP 235
           ++  P ++ K+ ++KER  E++ EK     +L+ WL  T    PAP
Sbjct: 716 KSKKPKKKEKKHKEKERDKEKKKEKEKKAEDLDFWLSTTPPPAPAP 761


>AB208804-1|BAD92041.1| 1284|Homo sapiens Adapter-related protein
            complex 3 delta 1 subunit variant protein.
          Length = 1284

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 104  RATSPTRRPKRCRDKER--EREAEKFNVNTELNNWLDVTLACQPAP 235
            ++  P ++ K+ ++KER  E++ EK     +L+ WL  T    PAP
Sbjct: 909  KSKKPKKKEKKHKEKERDKEKKKEKEKKAEDLDFWLSTTPPPAPAP 954


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,644,324
Number of Sequences: 237096
Number of extensions: 1272482
Number of successful extensions: 3945
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3720
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5251598958
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)