Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1d24
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78018-6|CAK12558.1|  346|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z78018-5|CAB01446.1|  398|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U28733-2|AAA68303.3|  381|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z78018-6|CAK12558.1|  346|Caenorhabditis elegans Hypothetical
           protein W07G4.5b protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 193 EQLARCNLGLSAGTKLVHETDSLARE 270
           E+LA CNLGL AG  +++  D +  E
Sbjct: 80  EELAACNLGLPAGNSILNVDDDVRLE 105


>Z78018-5|CAB01446.1|  398|Caenorhabditis elegans Hypothetical
           protein W07G4.5a protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 193 EQLARCNLGLSAGTKLVHETDSLARE 270
           E+LA CNLGL AG  +++  D +  E
Sbjct: 132 EELAACNLGLPAGNSILNVDDDVRLE 157


>U28733-2|AAA68303.3|  381|Caenorhabditis elegans Hypothetical
           protein C54A12.2 protein.
          Length = 381

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 274 RTLAPSCPSHVPVWCRLTSQGY-IEPVVQLRIHIKFFCFSFSFLI 143
           R +A   P  V +WCR T+  Y I  ++   + + F  F F F I
Sbjct: 187 RWIAVCRPLEVQIWCRYTTSSYSIAAIITFAVVLNFARF-FEFEI 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,346,798
Number of Sequences: 27780
Number of extensions: 196642
Number of successful extensions: 598
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)