Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1d24
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   1.5  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   2.6  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   2.6  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   2.6  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   2.6  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 529 LLHYFNENQSLNIALYIINLNDLIKKT 449
           +++ F+ N  +N  + I N+NDLIK T
Sbjct: 386 VIYGFDFND-VNFRILIANVNDLIKNT 411


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 89  KYYRFRATSPTRRPKRCRDKEREREAEKFNVNTELNNW 202
           +Y  +R TS  R   R   KERER  E   +++  NN+
Sbjct: 55  EYREYRETSRERSRDR---KERERSKEPKIISSLSNNY 89


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 89  KYYRFRATSPTRRPKRCRDKEREREAEKFNVNTELNNW 202
           +Y  +R TS  R   R   KERER  E   +++  NN+
Sbjct: 55  EYREYRETSRERSRDR---KERERSKEPKIISSLSNNY 89


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 89  KYYRFRATSPTRRPKRCRDKEREREAEKFNVNTELNNW 202
           +Y  +R TS  R   R   KERER  E   +++  NN+
Sbjct: 55  EYREYRETSRERSRDR---KERERSKEPKIISSLSNNY 89


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 89  KYYRFRATSPTRRPKRCRDKEREREAEKFNVNTELNNW 202
           +Y  +R TS  R   R   KERER  E   +++  NN+
Sbjct: 55  EYREYRETSRERSRDR---KERERSKEPKIISSLSNNY 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,430
Number of Sequences: 438
Number of extensions: 2575
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)