Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1d22
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0137 + 6996336-6996415,6998240-6998351,6999292-6999453,699...    29   3.5  
06_03_0152 + 17287133-17287490,17288541-17288734,17289349-172895...    28   6.1  
03_05_0436 + 24281580-24281871,24283102-24283212,24283873-242839...    28   6.1  
01_06_0216 + 27618116-27618548,27618960-27619042,27619169-276192...    28   8.1  

>05_02_0137 +
           6996336-6996415,6998240-6998351,6999292-6999453,
           6999755-6999874,6999947-7000108
          Length = 211

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 75  VKFILSSFTCLTFCFKTYQVHQINESAYLVIAV 173
           + +IL+ F+CLT+ +  + V Q+   A L++AV
Sbjct: 45  IPYILALFSCLTYSWYGFPVKQVMLMASLILAV 77


>06_03_0152 +
           17287133-17287490,17288541-17288734,17289349-17289557,
           17289640-17289742,17290128-17290291,17290554-17290692,
           17290908-17291078,17291162-17291298,17291445-17291759,
           17291906-17291965,17292372-17292511,17292691-17292788,
           17292875-17293387
          Length = 866

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +3

Query: 312 QKGKIPQEEINKARETYFRIFNATMKPTSSIGELFPIVP 428
           ++ +I +E ++   ETYFRI   +M  ++S G++  + P
Sbjct: 462 ERRRIQKEALSALFETYFRILKHSMSISNSRGKVINVSP 500


>03_05_0436 +
           24281580-24281871,24283102-24283212,24283873-24283994,
           24284432-24284640,24284720-24284894,24285007-24285141,
           24285222-24285428
          Length = 416

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = -1

Query: 305 YNRRTIRICEVTTFVRCLWFIY--QVIFVVVSLTDMSSFIIVVKIRNSDDQV--RAFINL 138
           YNR+    C+V +F  CLW IY   + +  +S  D+SS ++   +R    +    AF N+
Sbjct: 310 YNRK----CDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVHQNLRPDVPRCCPSAFANI 365

Query: 137 M 135
           M
Sbjct: 366 M 366


>01_06_0216 +
           27618116-27618548,27618960-27619042,27619169-27619225,
           27619255-27619407,27619777-27619872,27620103-27620183,
           27620184-27620254,27620343-27620385,27620502-27620582,
           27620684-27620743,27621018-27621083,27621358-27621455,
           27621794-27621842,27621933-27621977,27622845-27623369
          Length = 646

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +3

Query: 273 NFTNPYSSSIINHQKGKIPQEEINKARETYFRIFNATMKPTSSIGELFPIVPAYTNVSRI 452
           NF NP  + ++  Q   +P  +I K    YF++ +A  K  S + +   I     N S +
Sbjct: 441 NFANPDRAYLLAIQDPMVPDNDIGKNSFNYFKVKSAFSKAYSVLTDANLITSLGPNRSIL 500

Query: 453 NNI 461
             I
Sbjct: 501 GTI 503


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,846,146
Number of Sequences: 37544
Number of extensions: 236155
Number of successful extensions: 554
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)