Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1d20
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0437 - 3449611-3449715,3451831-3451878,3452002-3452120,345...   153   1e-37
09_02_0569 - 10752756-10753164,10753229-10753644,10754149-107553...    33   0.19 
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480...    32   0.45 
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72...    29   4.2  
10_08_0572 + 18860770-18860911,18861928-18862115,18862224-188624...    28   9.6  

>12_01_0437 -
           3449611-3449715,3451831-3451878,3452002-3452120,
           3452277-3452422,3452760-3452986
          Length = 214

 Score =  153 bits (372), Expect = 1e-37
 Identities = 76/160 (47%), Positives = 105/160 (65%), Gaps = 2/160 (1%)
 Frame = +1

Query: 193 AVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDL 372
           A+VCSSNMNRSMEAH+ L + G +V SYGTG  VKLPG S   PN Y+FG  Y+ IY+DL
Sbjct: 10  AMVCSSNMNRSMEAHSLLGRAGLDVASYGTGTHVKLPGPSLHEPNVYDFGTPYNVIYDDL 69

Query: 373 MEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQ--VCNERFDVIITCEERVYDQVIEWFGSR 546
             KD + Y +NGLL ML RN  +K  P+++Q    +  FDVI + EERV+D +++   +R
Sbjct: 70  RRKDPDLYKRNGLLPMLKRNTSVKLAPQRWQDNAGDGLFDVIFSFEERVFDLIVDDMHNR 129

Query: 547 RSIYNQPVHVVNIDIQDNHEEATIGAFLISDMVTKMAQSD 666
                +   ++N+D++DNHEEA +GA L  D+  K +  D
Sbjct: 130 EQRMLKNALIINMDVKDNHEEAGVGAKLALDLCQKPSLLD 169


>09_02_0569 -
           10752756-10753164,10753229-10753644,10754149-10755349,
           10756770-10756991,10757615-10757767,10757883-10758034,
           10758142-10758222,10758353-10758598,10759394-10759516
          Length = 1000

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
 Frame = +1

Query: 469 CNERFDVIITCEERVYDQVIEWFGSRRSIYNQPVHVVNIDIQDNHEEATIGA--FLISDM 642
           C    + I  C+  +  + I+W   +R+  + P+H V++ I    +   + A  FL S +
Sbjct: 50  CRVHKETINLCKSVLQRKSIDWISVQRNDMSNPIHDVDLVISVGGDGTLLRASHFLNSSI 109

Query: 643 VTKMAQSD-DLDNDIDELLHEFESK 714
                 SD    +++DEL  EF+++
Sbjct: 110 PVLGVNSDPTCPDEVDELTDEFDAR 134


>06_03_0783 -
           24546403-24546765,24547202-24547262,24547899-24548004,
           24548118-24551600,24553134-24553179
          Length = 1352

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 334 EFGVLYDEIYNDLMEKDKNYYTQNGLLHMLDRNR--RIKPCPEKFQVCNERFDVIITCEE 507
           ++G     + +DLM  D  ++T NG  + LD +    I P      +  ER D++ TC+ 
Sbjct: 540 QYGGTVHYVMHDLMN-DLAFHTSNGECYRLDVDEPEEIPPAVRHLSILAERIDLLCTCKL 598

Query: 508 RVYDQVIEW 534
           +    +I W
Sbjct: 599 QRLRTLIIW 607


>06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-725639,
            725738-725840,726106-726264,726728-726846,726891-727004,
            727119-727277,727404-727451,728464-728640,729064-729116,
            729549-729661,729793-729873,729966-730081,730786-730905,
            732321-732429,732593-732770,732852-732920,733102-733233,
            733657-733766,733843-734003,734081-734171,734258-734355,
            734499-734619,734732-734892,734985-735090,735142-735236,
            735828-735852,736008-736084,736196-736282,736372-736421,
            736558-736639,736735-736795,737064-737116,737206-737395,
            737472-737595,737860-737962,738064-738156,740344-740422,
            740508-740584,740915-741043,742614-742731,742816-742913,
            743457-743546,744998-745123,745238-745351,745488-745611,
            745865-746019,746104-746201,746357-746600
          Length = 1926

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 579  YYVNRLIID*PSRAKPFNYLIIYSFFTSYY 490
            ++ N L +D P+ AKP + +I +S FT YY
Sbjct: 1055 FFTNSLFMDMPA-AKPVSEMIPFSVFTPYY 1083


>10_08_0572 +
           18860770-18860911,18861928-18862115,18862224-18862463,
           18862554-18862775,18865772-18865982,18866113-18866210
          Length = 366

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 166 NFKMSDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLP 303
           NFK+S   V+V+      RS+ + A  +  G  +K+ G G K  LP
Sbjct: 200 NFKLSSGGVSVLEYEESLRSVASRALKLILGVGMKTVGNGRKNPLP 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,251,539
Number of Sequences: 37544
Number of extensions: 314292
Number of successful extensions: 738
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)