Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1d20
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.4  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   9.8  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +1

Query: 145 KCSVA*SNFKMSDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEK 291
           KC+   S++        +   S ++   E + FL KKGF++  Y    K
Sbjct: 168 KCATDFSSWPYDTHRCRINFGSWVHSGEEVNIFLDKKGFHMDGYTNNSK 216


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 688 HLYHCPNHRFEPFLL 644
           H Y   NH + PF+L
Sbjct: 230 HFYFMLNHNYPPFML 244


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 688 HLYHCPNHRFEPFLL 644
           H Y   NH + PF+L
Sbjct: 230 HFYFMLNHNYPPFML 244


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +1

Query: 667 DLDNDIDELLHEFESKCHRPILNCIMFYWK 756
           +L ND   +++      + P+L  + FYW+
Sbjct: 240 ELTNDAGYVVYSALGSFYIPMLVMLFFYWR 269


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/44 (20%), Positives = 24/44 (54%)
 Frame = +1

Query: 163 SNFKMSDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKV 294
           S+ ++++ + A++   N+N + +      KKG +++ Y    K+
Sbjct: 522 SDIELANTFKAIIYGFNVNATKQIKDEANKKGVSLRFYNVVYKL 565


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +1

Query: 361 YNDLMEKDKNYYTQNGLLH-MLDRNRRIK 444
           Y DL  +D+N Y  +G      DR+R  K
Sbjct: 234 YEDLRHEDRNSYRNDGERSCSRDRSREYK 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,502
Number of Sequences: 438
Number of extensions: 4093
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)