Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1d19
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0722 + 5405550-5405810,5406654-5407399,5407575-5408046,540...    29   1.3  

>02_01_0722 +
           5405550-5405810,5406654-5407399,5407575-5408046,
           5408129-5408296,5408301-5408418,5408845-5409056,
           5409165-5409287,5409395-5409880,5409976-5410401
          Length = 1003

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +3

Query: 150 LTSHSLQDNRALLVGAIMVSIYLGGKYLLEMDRMNNDVPMANLTGLG*ETRC 305
           LTS S +        A+++S  L GKYL  + +      ++ LT L  ET C
Sbjct: 375 LTSESFEGQDFFETSAMLISFILLGKYLEVVAKGKTSDALSKLTELAPETAC 426


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,315,206
Number of Sequences: 37544
Number of extensions: 147603
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)