Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1d17
(759 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 27 2.9
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 27 3.8
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 5.1
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 5.1
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp... 26 5.1
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 26 6.7
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 8.9
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 25 8.9
SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces... 25 8.9
SPAC1002.01 ||SPAC1610.05|conserved fungal protein|Schizosacchar... 25 8.9
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 25 8.9
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 212 LLSLFLENYTKETGI--KVLGTVLVS*VISCLIIPINWSTVANGFAENQKVSVGV 370
LLS+ E +K + V ++ +ISCL P+ W T+A + V GV
Sbjct: 367 LLSIMQERNSKAMYMYKPVTSSIRFLQIISCLSFPVGWRTLAKDLFKLLPVYTGV 421
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 451 NTFYTGYWNKDQREGLGMFVEGATSGLS 534
NT+++GY +D +E + F++G L+
Sbjct: 361 NTYFSGYRQQDSQEFIAFFLDGLHEDLN 388
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 26.2 bits (55), Expect = 5.1
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = -1
Query: 510 YKHSQSLSLVFIPIP-GVKGVVRIP----HFTVPMFLTTFPETEVNVFIAVITPT 361
Y H +SL F P G+ IP VPM+ TTFP ++ + A P+
Sbjct: 287 YPHPTGISLPFYPFDSGIPVSPNIPVSPSSSFVPMYPTTFPSSKPQIVNAPPAPS 341
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 5.1
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = -1
Query: 435 FTVPMFLTTFPETEVNVFIAVITPTDTFW 349
F P++ +++PE +N + + P+ FW
Sbjct: 13 FGKPVYFSSYPEVPLNCSLVIDGPSFAFW 41
>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 672 MYCMCIKLCYKIFSHVEFILSMHVCNFLSILPIFCFT 562
+YC+ + + SH+ F+L +FLS +C T
Sbjct: 224 IYCILCYPGFHLISHLNFVLRFRNADFLSGEQRYCLT 260
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 593 FYQFYQFFALPRIRSFLI*VESPEVAPSTNIPN 495
FYQF +LP I+ L+ +++ E S NIPN
Sbjct: 573 FYQFQNMESLPLIKEELMQLKNEET--SINIPN 603
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 382 EDVYFGFWKSGQKHGYGKMWYSDNTFYTGYWNKDQREGLG 501
+DV+FG++ G K G W ++N YW++ GLG
Sbjct: 303 DDVFFGWF--GDKAISG--WSNNNFDAYSYWHESPNMGLG 338
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -1
Query: 636 FSHVEFILSMHVCNFLSILPI 574
+ +EF++S+H C L ++PI
Sbjct: 865 YDPLEFLISIHSCFHLGVIPI 885
>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 113
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 443 ILTTPFTPGIGIKTRERDWECL*KEQ 520
IL PGI + ++DWE L KE+
Sbjct: 54 ILNGTVRPGIIVLVNDQDWELLEKEE 79
>SPAC1002.01 ||SPAC1610.05|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 179
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 642 KIFSHVEFILSMHVCNFLSILPIFCFTQNSL 550
K FSH+ L +H + + LPIF F +SL
Sbjct: 80 KPFSHIFAFLFLHELSAILPLPIFFFIFHSL 110
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 382 EDVYFGFWKSGQKHGYGKMWYSDNTFYTGYWNKDQREGLG 501
+DV+FG++ G K G W ++N YW++ GLG
Sbjct: 303 DDVFFGWF--GDKAISG--WSNNNFDAYSYWHESPNMGLG 338
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,238,967
Number of Sequences: 5004
Number of extensions: 73998
Number of successful extensions: 221
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -