Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1d17
(759 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75550-5|CAA99924.2| 747|Caenorhabditis elegans Hypothetical pr... 69 5e-12
AB069909-1|BAB62876.1| 747|Caenorhabditis elegans junctophilin ... 69 5e-12
Z82262-1|CAB05151.2| 361|Caenorhabditis elegans Hypothetical pr... 31 0.89
Z93377-2|CAB07575.2| 326|Caenorhabditis elegans Hypothetical pr... 30 2.1
AL117207-16|CAH60778.1| 402|Caenorhabditis elegans Hypothetical... 30 2.1
AF068717-2|AAC17763.1| 325|Caenorhabditis elegans Serpentine re... 29 3.6
U00031-1|AAZ82851.1| 330|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr... 28 8.3
AF099917-9|AAC68787.1| 445|Caenorhabditis elegans Hypothetical ... 28 8.3
>Z75550-5|CAA99924.2| 747|Caenorhabditis elegans Hypothetical
protein T22C1.7 protein.
Length = 747
Score = 68.5 bits (160), Expect = 5e-12
Identities = 37/114 (32%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Frame = +1
Query: 166 KYVGDWKNDLKDGKGAFVTVSGKLYEGDWYKGFRHGFGVLSNKLPDNTYKLEYRGEWVRG 345
+Y G W + G + SG Y+G W G RHG G+ + + Y+GEW +G
Sbjct: 37 EYAGAWHYGF-EVSGVYTWPSGNTYQGQWQNGKRHGLGI------EQRGRWLYKGEWTQG 89
Query: 346 KPEGVGWRYYGNEDV-YFGFWKSGQKHGYGKMWYSDNTFYTGYWNKDQREGLGM 504
G R N Y G W +G GYG Y D+ Y G W + R G G+
Sbjct: 90 YKGRYGVRQSANSQARYQGTWSAGFHDGYGTEIYVDSGSYQGQWLRGMRHGYGI 143
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +1
Query: 142 AVFTSRFDKYVGDWKNDLKDGKGAFVTVSGKLYEGDWYKGFRHGFGVLSNK 294
AV S + Y+G+WKND++ G G G Y+G+W + G+GV + K
Sbjct: 274 AVEESSIETYMGEWKNDMRSGFGVCERSDGLKYQGEWANNAKCGYGVTTFK 324
Score = 43.6 bits (98), Expect = 2e-04
Identities = 30/99 (30%), Positives = 43/99 (43%)
Frame = +1
Query: 208 GAFVTVSGKLYEGDWYKGFRHGFGVLSNKLPDNTYKLEYRGEWVRGKPEGVGWRYYGNED 387
G F G Y G W +G HG GV + K EY G W G E G + + +
Sbjct: 4 GRFDFDDGGTYVGGWEEGKAHGHGVCTGP----QAKGEYAGAWHYGF-EVSGVYTWPSGN 58
Query: 388 VYFGFWKSGQKHGYGKMWYSDNTFYTGYWNKDQREGLGM 504
Y G W++G++HG G + Y G W + + G+
Sbjct: 59 TYQGQWQNGKRHGLG-IEQRGRWLYKGEWTQGYKGRYGV 96
Score = 43.6 bits (98), Expect = 2e-04
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 166 KYVGDWKNDLKDGKGAFVTVSGKLYEGDWYKGFRHGFGVLSNKLPDNTYKLEYRGE 333
+Y G W DG G + V Y+G W +G RHG+G+ + + K + +
Sbjct: 105 RYQGTWSAGFHDGYGTEIYVDSGSYQGQWLRGMRHGYGIRKSTTYEKAAKFRSKSQ 160
Score = 38.3 bits (85), Expect = 0.006
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Frame = +1
Query: 124 KNGVHHAVFTSRFDK--YVGDWKNDLKDGKGAFVTVSGKL-YEGDWYKGFRHGFGVLSNK 294
+NG H + + + Y G+W K G + + + Y+G W GF G+G +
Sbjct: 65 QNGKRHGLGIEQRGRWLYKGEWTQGYKGRYGVRQSANSQARYQGTWSAGFHDGYG--TEI 122
Query: 295 LPDNTYKLEYRGEWVRGKPEGVGWRYYGNEDVYFGFWKSGQKH 423
D+ Y+G+W+RG G G R + F Q H
Sbjct: 123 YVDSG---SYQGQWLRGMRHGYGIRKSTTYEKAAKFRSKSQTH 162
Score = 34.3 bits (75), Expect = 0.095
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +1
Query: 322 YRGEWVRGKPEGVGWRYYGN-EDVYFGFWKSGQKHGYGKMWYSDNTFYTGYWNKDQREGL 498
Y G W GK G G + Y G W G + W S NT Y G W +R GL
Sbjct: 14 YVGGWEEGKAHGHGVCTGPQAKGEYAGAWHYGFEVSGVYTWPSGNT-YQGQWQNGKRHGL 72
Query: 499 GMFVEG 516
G+ G
Sbjct: 73 GIEQRG 78
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 385 DVYFGFWKSGQKHGYGKMWYSDNTFYTGYWNKDQREGLGM 504
+ Y G WK+ + G+G SD Y G W + + G G+
Sbjct: 281 ETYMGEWKNDMRSGFGVCERSDGLKYQGEWANNAKCGYGV 320
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +1
Query: 322 YRGEWVRGKPEGVGWRYYGNEDVYFGFWKSGQKHGYGKMWYSDNTFYTGYWNKD 483
Y GEW G G + Y G W + K GYG + D T G + +
Sbjct: 283 YMGEWKNDMRSGFGVCERSDGLKYQGEWANNAKCGYGVTTFKDGTKEEGRYKNN 336
>AB069909-1|BAB62876.1| 747|Caenorhabditis elegans junctophilin
protein.
Length = 747
Score = 68.5 bits (160), Expect = 5e-12
Identities = 37/114 (32%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Frame = +1
Query: 166 KYVGDWKNDLKDGKGAFVTVSGKLYEGDWYKGFRHGFGVLSNKLPDNTYKLEYRGEWVRG 345
+Y G W + G + SG Y+G W G RHG G+ + + Y+GEW +G
Sbjct: 37 EYAGAWHYGF-EVSGVYTWPSGNTYQGQWQNGKRHGLGI------EQRGRWLYKGEWTQG 89
Query: 346 KPEGVGWRYYGNEDV-YFGFWKSGQKHGYGKMWYSDNTFYTGYWNKDQREGLGM 504
G R N Y G W +G GYG Y D+ Y G W + R G G+
Sbjct: 90 YKGRYGVRQSANSQARYQGTWSAGFHDGYGTEIYVDSGSYQGQWLRGMRHGYGI 143
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +1
Query: 142 AVFTSRFDKYVGDWKNDLKDGKGAFVTVSGKLYEGDWYKGFRHGFGVLSNK 294
AV S + Y+G+WKND++ G G G Y+G+W + G+GV + K
Sbjct: 274 AVEESSIETYMGEWKNDMRSGFGVCERSDGLKYQGEWANNAKCGYGVTTFK 324
Score = 43.6 bits (98), Expect = 2e-04
Identities = 30/99 (30%), Positives = 43/99 (43%)
Frame = +1
Query: 208 GAFVTVSGKLYEGDWYKGFRHGFGVLSNKLPDNTYKLEYRGEWVRGKPEGVGWRYYGNED 387
G F G Y G W +G HG GV + K EY G W G E G + + +
Sbjct: 4 GRFDFDDGGTYVGGWEEGKAHGHGVCTGP----QAKGEYAGAWHYGF-EVSGVYTWPSGN 58
Query: 388 VYFGFWKSGQKHGYGKMWYSDNTFYTGYWNKDQREGLGM 504
Y G W++G++HG G + Y G W + + G+
Sbjct: 59 TYQGQWQNGKRHGLG-IEQRGRWLYKGEWTQGYKGRYGV 96
Score = 43.6 bits (98), Expect = 2e-04
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 166 KYVGDWKNDLKDGKGAFVTVSGKLYEGDWYKGFRHGFGVLSNKLPDNTYKLEYRGE 333
+Y G W DG G + V Y+G W +G RHG+G+ + + K + +
Sbjct: 105 RYQGTWSAGFHDGYGTEIYVDSGSYQGQWLRGMRHGYGIRKSTTYEKAAKFRSKSQ 160
Score = 38.3 bits (85), Expect = 0.006
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Frame = +1
Query: 124 KNGVHHAVFTSRFDK--YVGDWKNDLKDGKGAFVTVSGKL-YEGDWYKGFRHGFGVLSNK 294
+NG H + + + Y G+W K G + + + Y+G W GF G+G +
Sbjct: 65 QNGKRHGLGIEQRGRWLYKGEWTQGYKGRYGVRQSANSQARYQGTWSAGFHDGYG--TEI 122
Query: 295 LPDNTYKLEYRGEWVRGKPEGVGWRYYGNEDVYFGFWKSGQKH 423
D+ Y+G+W+RG G G R + F Q H
Sbjct: 123 YVDSG---SYQGQWLRGMRHGYGIRKSTTYEKAAKFRSKSQTH 162
Score = 34.3 bits (75), Expect = 0.095
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +1
Query: 322 YRGEWVRGKPEGVGWRYYGN-EDVYFGFWKSGQKHGYGKMWYSDNTFYTGYWNKDQREGL 498
Y G W GK G G + Y G W G + W S NT Y G W +R GL
Sbjct: 14 YVGGWEEGKAHGHGVCTGPQAKGEYAGAWHYGFEVSGVYTWPSGNT-YQGQWQNGKRHGL 72
Query: 499 GMFVEG 516
G+ G
Sbjct: 73 GIEQRG 78
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 385 DVYFGFWKSGQKHGYGKMWYSDNTFYTGYWNKDQREGLGM 504
+ Y G WK+ + G+G SD Y G W + + G G+
Sbjct: 281 ETYMGEWKNDMRSGFGVCERSDGLKYQGEWANNAKCGYGV 320
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +1
Query: 322 YRGEWVRGKPEGVGWRYYGNEDVYFGFWKSGQKHGYGKMWYSDNTFYTGYWNKD 483
Y GEW G G + Y G W + K GYG + D T G + +
Sbjct: 283 YMGEWKNDMRSGFGVCERSDGLKYQGEWANNAKCGYGVTTFKDGTKEEGRYKNN 336
>Z82262-1|CAB05151.2| 361|Caenorhabditis elegans Hypothetical
protein C43F9.4 protein.
Length = 361
Score = 31.1 bits (67), Expect = 0.89
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = -1
Query: 480 FIPIPG---VKGVVRI----PHFTVPMFLTTFPETEVNVFIAVITPTDTFWFSANPFATV 322
F+P+PG VK + R P+F+ + + +A++ TD NPF V
Sbjct: 126 FVPVPGGHFVKSITRTIELDPYFSSGLRFLVLECMSFRMTMALVRTTDVLTSKINPFPRV 185
Query: 321 LQFI 310
+QF+
Sbjct: 186 IQFL 189
>Z93377-2|CAB07575.2| 326|Caenorhabditis elegans Hypothetical
protein F13A7.3 protein.
Length = 326
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 269 TVLVS*VISCLIIPINWSTVANGFAENQKVSVGVITAMKT 388
TV+ S ++C+ I I +S +A +KV GV+T+ KT
Sbjct: 177 TVMTSYFVTCVSIIIMYSQIAVVMVRARKVEQGVLTSTKT 216
>AL117207-16|CAH60778.1| 402|Caenorhabditis elegans Hypothetical
protein Y60A3A.24 protein.
Length = 402
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +1
Query: 139 HAVFTSRFDKYVGDWKNDLKDGKGAFVTVSGKLYEGDWYKGFRHGFGVLSNKLPDNTYKL 318
H + +DK + DWKN ++ + VTV G L K F ++ +L K+
Sbjct: 286 HKIAKDEWDKTISDWKNKEEEAEKQGVTV-GTLATRKTKKA--KAFHTINFELCAENVKI 342
Query: 319 EYRGEWVRGKPEGVGWRYYGN--EDVYF 396
E + K + W YG ++V+F
Sbjct: 343 EIKVGREEQKLLNIQWNLYGKCLQNVFF 370
>AF068717-2|AAC17763.1| 325|Caenorhabditis elegans Serpentine
receptor, class h protein248 protein.
Length = 325
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 681 IF*MYCMCIKLCYKIFSHVEFILSMHVCNFLSILPIFCF 565
IF YC+ K K+ S ++++H +FLS L I CF
Sbjct: 32 IFGAYCILFKTPEKMKSVKWLMMNLHFWSFLSDLTICCF 70
>U00031-1|AAZ82851.1| 330|Caenorhabditis elegans Hypothetical
protein B0361.4 protein.
Length = 330
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 623 NSFYQCTFVIFYQFYQFFAL 564
+S Y C F I Y FY FF++
Sbjct: 309 SSIYSCYFSIIYYFYYFFSI 328
>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
protein C23H4.6 protein.
Length = 1137
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 518 QLQDSRLILEKSEFWVKQKIGRIDKKLQTCIDKMNST 628
+LQ+ ILE+ + ++ K+ +D+K Q I N +
Sbjct: 764 ELQEKLSILEEEAYCIQDKLDELDEKFQPAIKTKNES 800
>AF099917-9|AAC68787.1| 445|Caenorhabditis elegans Hypothetical
protein F54D10.9 protein.
Length = 445
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 343 GKPEGVGWRYYGNEDVYFGFWKSGQKHGYGKMWYSDNTFYTGYWNK 480
G E +G YYG + VY ++G G+ WY+ Y+NK
Sbjct: 284 GPDEELG-NYYGLDTVYMYCAETGPAADIGRWWYNKPFNVQTYFNK 328
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,449,432
Number of Sequences: 27780
Number of extensions: 398693
Number of successful extensions: 1194
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -