Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1d16
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    62   1e-10
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    50   2e-07
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    40   3e-04
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    28   1.5  
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    27   2.6  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   4.5  

>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 30/79 (37%), Positives = 44/79 (55%)
 Frame = +2

Query: 452 DTPNSDMLPYMDRVADLINEVVTNGGVVLVHCVAGVSRSVTLCLAYLVKWQKMTLRDAYH 631
           D+ + ++L Y ++    I   ++    VLVHC AG+SRSVTL  AYL+K       +A  
Sbjct: 100 DSSSQNILQYFEKSNKFIAFALSKNAKVLVHCFAGISRSVTLVAAYLMKENNWNTEEALS 159

Query: 632 YLKIRRPQIRPNTGFFKQL 688
           ++  RR  I PN  F +QL
Sbjct: 160 HINERRSGISPNANFLRQL 178


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 22/55 (40%), Positives = 34/55 (61%)
 Frame = +2

Query: 533 VLVHCVAGVSRSVTLCLAYLVKWQKMTLRDAYHYLKIRRPQIRPNTGFFKQLIKF 697
           VL++C  G+SRS  L +A+++K   + + DAY Y+K R P I PN     QL ++
Sbjct: 154 VLINCQMGISRSACLMIAFIMKTLNLNVSDAYEYVKERSPWIGPNMSLIFQLSEY 208


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +2

Query: 473 LPYMDRVADLIN--EVVTNGGVVLVHCVAGVSRSVTLCLAYLVKWQKMTLRDAYHYLKIR 646
           +P +  V + I+  E V   GV+ VHC AG+ R+  L  AYL+     T  +   Y++I 
Sbjct: 260 VPELSLVKEFIDLTEEVEEDGVIAVHCKAGLGRTGCLIGAYLIYKHCFTANEVIAYMRIM 319

Query: 647 RP 652
           RP
Sbjct: 320 RP 321


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +2

Query: 497 DLINEVVTNGGVVLVHCVA-GVSRSVTLC 580
           D ++E+VTNGG++ ++ +  GVS SV  C
Sbjct: 68  DHLHELVTNGGILYMNSLGEGVSGSVRKC 96


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 533 VLVHCVAGVSRSVTLCLAYLVKWQKMTLRDA 625
           ++VHC AG  R+ T+  +YLV +  +T + +
Sbjct: 125 LVVHCKAGKGRTGTVICSYLVAFGGLTAKQS 155


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 476 PYMDRVADLIN--EVVTNGGVVLVHCVAGVSRSVT 574
           P ++ +  +I   + V N G + VHC AGV R+ T
Sbjct: 605 PDIESITGIIRCIDKVPNDGPMFVHCSAGVGRTGT 639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,228
Number of Sequences: 5004
Number of extensions: 56469
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)