Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1d16
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   0.91 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.5  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 248 DTQKLIREELNRGCP 292
           D QK +REE+N  CP
Sbjct: 325 DVQKKLREEINTFCP 339


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 502 KVSNPIHIGEHI*VRSVQQGYEMPRYVIFG 413
           K++  IH GE   V +   G+ MPRY +FG
Sbjct: 509 KITIGIHSGE---VVTGVIGHRMPRYCLFG 535


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 502 KVSNPIHIGEHI*VRSVQQGYEMPRYVIFG 413
           K++  IH GE   V +   G+ MPRY +FG
Sbjct: 509 KITIGIHSGE---VVTGVIGHRMPRYCLFG 535


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -1

Query: 520 CDHLINKVSNPIH--IGEHI*-VRSVQQGYEMPRYVIFG 413
           C H +     PI   IG H   V +   G +MPRY +FG
Sbjct: 570 CSHHLTHKGKPIRMRIGIHTGMVLAGVVGKKMPRYCLFG 608


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 562 GHSGDAMNQHHPS 524
           GHSG + + HH S
Sbjct: 396 GHSGQSSSHHHGS 408


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 445 GYEMPRYVIFG 413
           G +MPRY +FG
Sbjct: 532 GLKMPRYCLFG 542


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,732
Number of Sequences: 438
Number of extensions: 3652
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)