Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1d15
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp...    29   0.73 
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    27   3.9  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.8  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    25   9.0  

>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
           Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 23/90 (25%), Positives = 40/90 (44%)
 Frame = +1

Query: 82  SSEDEKLSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDPYPVPDVKQSLTLGTMNFKN 261
           SSE   L+EG +    +   +L+ Y+  +  G  GA     Y   DV  ++      FK 
Sbjct: 16  SSETSLLTEGPESDEEDEGPLLKQYRLKNMLGY-GA-CSTVYLAVDVSTNIEYAIKEFKK 73

Query: 262 IALYGTNEFRLNYVKADIGAMEAHAVMTLE 351
            +L    +FRL  ++ ++G+       T+E
Sbjct: 74  TSLRRREKFRLMQLEKELGSFNDMDSSTIE 103


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +1

Query: 91  DEKLSEGEKKLSHNILAILEHYKQPDP--TGLPGAKLPDPYPV---PDVKQSLTLGTMNF 255
           D+ +S G   + HN +  ++H    DP  TGLP     D  P+    + + S+ +G   +
Sbjct: 265 DDSVSAGAAFIPHNPMDSIDHLDVNDPTATGLPVLPASDIDPLNLTGNTQDSMIIGQQTY 324

Query: 256 KNIALYGT 279
            +    GT
Sbjct: 325 PSHGSSGT 332


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 146  WSIINSRIPRDCRELNYQIHTQFQTSNSH 232
            W +I +RIP+ C + +Y ++  ++   SH
Sbjct: 1437 WQVI-TRIPQYCHDTHYGVYDAYRDFRSH 1464


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -1

Query: 348 ESHHGVGLHCSDIGLNVI*TEFVSSIQSYVFKIHSSKSE*LFDVWNWV 205
           ES H V +  SD+G       F+    S+ +K  + K E  +  W+++
Sbjct: 176 ESIHQVMILFSDLGGTPYSYRFMDGFSSHTYKFVNDKGEFYYCKWHFI 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,173,718
Number of Sequences: 5004
Number of extensions: 64554
Number of successful extensions: 202
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)