Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1d15
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     28   0.11 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   2.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.1  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 741 TFFPYISNDHIQWRYRVWELQIARHFINLFVHRGFDGGISFLEDVR-FDRI 592
           T FP+I     Q R   W   +ARH +  F+ RG D  IS+ E ++ FD +
Sbjct: 352 TGFPWIDAIMTQLREEGWIHHLARHAVACFLTRG-DLWISWEEGMKVFDEL 401


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 220 RLELGMDLVV*LPAVPWDPAVYNAPE*PRYY 128
           ++E+G+DL    P+V WD     A    +YY
Sbjct: 185 KVEIGIDLREYYPSVEWDILGVPAERHKKYY 215


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 469 RDGKIRAENIVMDLSASNIAVNL 537
           R  ++RAE+I M+   +NIAV+L
Sbjct: 175 RQYRLRAEDINMNTFIANIAVDL 197


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 222 DVWNWVWIW 196
           D WNWV+ W
Sbjct: 625 DQWNWVYEW 633


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.135    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,356
Number of Sequences: 438
Number of extensions: 4630
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)