Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1d14
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    30   0.28 
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.48 
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    27   1.9  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    27   3.4  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   3.4  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    27   3.4  
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa...    26   4.5  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    26   4.5  
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    26   4.5  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.9  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.9  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   5.9  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.9  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    26   5.9  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    26   5.9  
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c...    26   5.9  

>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 26/102 (25%), Positives = 49/102 (48%)
 Frame = +3

Query: 357  NVQNIKCSQMNTKNKSKKTKDLSQADELCIKSQEHLNETLANTLHINNINSNLTNGTSDH 536
            +++ +K    N +  SKK +DL+   E  ++      E L+     ++ N +L+N  S  
Sbjct: 1180 DLEGLKDVDTNFQELSKKHRDLTFNHESLLRQSASYKEKLSLA---SSENKDLSNKVSSL 1236

Query: 537  SNGSSEVLSEKADGQGETVNKVTNDVNSVQHNDTSNNFEGKK 662
            +   +E LS KA    E   K+TN ++  +++     FE +K
Sbjct: 1237 TKQVNE-LSPKASKVPELERKITNLMH--EYSQLGKTFEDEK 1275


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +3

Query: 348 ADNNVQNIKCSQMNTKNKSKKTKDLSQADELCIKSQEHLNETLANTLHI-NNINSNLTNG 524
           ++NN++  +  +       +  K   +AD L IKS  ++++  +N L++ NN+ S+    
Sbjct: 316 SNNNLKLNEAEENQNLLNLRSPKSSGKADNLTIKSSSNIDKVTSNDLYLDNNLQSHFKVT 375

Query: 525 TSDHSN 542
            S  +N
Sbjct: 376 ESQPTN 381


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/69 (23%), Positives = 37/69 (53%)
 Frame = +3

Query: 360 VQNIKCSQMNTKNKSKKTKDLSQADELCIKSQEHLNETLANTLHINNINSNLTNGTSDHS 539
           ++ +K S+++  +  + ++D  + DE    S  + NE  +++    + N   T+G+ DH+
Sbjct: 93  IRKVKSSKLSPISNMEDSEDKKEEDE----SSSYKNEFKSSSSASVSSNFEKTSGSDDHN 148

Query: 540 NGSSEVLSE 566
           + S   L+E
Sbjct: 149 SQSPVPLNE 157


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 435 ELCIKSQEHLNETLANTLHINNINSNLTN 521
           +L I S   +  TL N LHI  I+  LTN
Sbjct: 46  KLAISSWNRIPLTLCNKLHIKRISGALTN 74


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
 Frame = +3

Query: 378  SQMNTKNKSKKTKDLSQADELCIKSQEHLNETL---ANTLH--INNINSNLTNGTSDHSN 542
            S   +K +SK+   ++   ++     +  NE+L   A+ LH  +N+ NSN+       +N
Sbjct: 785  SDQKSKFESKQQDLIANIGKIVSNFLQEQNESLYTKADILHSHLNDTNSNIRKANEIMNN 844

Query: 543  GSSEVLSEKADGQGETVNKVTNDVNSVQHNDTSNNFEGKKTTMPSINRCL 692
             S E L   A  Q E V      +     N  S   + K   + S +R +
Sbjct: 845  RSEEFL-RNAASQAEIVGANKERIQKTVENG-SQLLDSKSKAIHSNSRSM 892


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/63 (22%), Positives = 26/63 (41%)
 Frame = +3

Query: 462 LNETLANTLHINNINSNLTNGTSDHSNGSSEVLSEKADGQGETVNKVTNDVNSVQHNDTS 641
           L ET+ N + +++I  NLT    +      ++  +      +   K   D NS ++    
Sbjct: 629 LIETITNAISVHSIKKNLTKQLREAELAQGKIAGKNVVTLKDYFIKQFGDPNSSRYRQAQ 688

Query: 642 NNF 650
            NF
Sbjct: 689 TNF 691


>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 480 NTLHINNINSNLTNGTSDHSNGSSEVLSEKADGQGETVNKVTNDVNSVQ 626
           N LHINN   +  N      N     LS   + +   +NK+   +N +Q
Sbjct: 23  NELHINNSGMSELNKKLQLPNVELSTLSHTQEQEFNELNKLIRKINELQ 71


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 461 MFLTLYT-KFISLRKIFGLFTFIFRVHLTTLYILNVVIRYFIHDVDLPRLFTHSKDF*AR 285
           M  +LY  +F  L  + G   FIF++ + TLYI  +  R+  +   L + + +  +    
Sbjct: 46  MVTSLYHFRFYGLNTL-GKIIFIFQLSILTLYICCITFRFIRYPGTLSKTWKNPSEVLFM 104

Query: 284 PISVL 270
           P ++L
Sbjct: 105 PTALL 109


>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 492 CVEY*LKSHSNVLDSLYKVHQLEKDL 415
           C E+   SH +V D LY    L KDL
Sbjct: 34  CKEWLKSSHPDVYDKLYGEQDLSKDL 59


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 504 NSNLTNGTSDHSNGSSEVLSEKADGQGETV 593
           N N+   T DH N +S V+ E+ + Q + V
Sbjct: 793 NENMGETTVDHENINSNVMDEQGEKQKDDV 822


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 465 NETLANTLH-INNINSNLTNGTSDHSNGSSEVLSEKAD 575
           N ++ N +  +N+ NSN+ NG+S + N SS  L  KA+
Sbjct: 179 NSSINNMVSTVNSENSNVNNGSSLNGNTSSN-LKRKAN 215


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 345 VADNNVQNIKCSQMNTKNKSKKTKDLSQADELC 443
           +  N V+N+KCS   T + SK ++ LS   ELC
Sbjct: 373 ICSNAVKNLKCSANGTPSGSKISQVLS---ELC 402


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/94 (20%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
 Frame = +3

Query: 408  KTKDLSQADELCIKSQEHLNETLANTLHINNIN-SNLTNGTSDHSNGSSEVLSEKADGQG 584
            K + ++  D + I S    +++ +  L+ + +  + L+ G+       ++ +  + + Q 
Sbjct: 765  KVEVVAAHDAVSISSNSSTHKSHSEPLNRDELEVAALSRGSLPEPPKPNKQIVVQEEDQR 824

Query: 585  ETVNKVTNDVNSVQHNDTS-NNFEGKKTTMPSIN 683
            +T++  T+      H+ ++ NN   + TT PSIN
Sbjct: 825  DTLSLKTSTTGLSSHSKSAENNSTQQSTTSPSIN 858


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 306 FKGFLSSSNFCFIPTYTSSPCQIHRGVSPTSWQVDLSFKTPFQL 175
           F  F   +  C+I +    P QIH   +P    +D   +T FQL
Sbjct: 256 FSEFFDGAEICYI-SGRQYPVQIHYTYTPEPDYLDACLRTIFQL 298


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
            homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/56 (21%), Positives = 23/56 (41%)
 Frame = +3

Query: 477  ANTLHINNINSNLTNGTSDHSNGSSEVLSEKADGQGETVNKVTNDVNSVQHNDTSN 644
            A  +  + + +N  +   DH   +++ ++E        V  V      VQH D S+
Sbjct: 993  AQLVAASRVKANFASKVQDHLEDAAKAVTEACKALVRQVESVALKAKEVQHEDFSS 1048


>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 357 NVQNIKCSQMNTKNKSKKTKDLSQADELCIKSQEHLNE 470
           +VQN+     NTKN  K+     + D+L + S E+  E
Sbjct: 33  DVQNVYGLDRNTKNLEKRDIQFLENDKLDLNSHENEGE 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,828
Number of Sequences: 5004
Number of extensions: 48057
Number of successful extensions: 172
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)