Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1d13
(732 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 268 5e-73
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 2.8
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 27 3.6
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 26 4.8
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch... 26 6.4
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 26 6.4
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni... 26 6.4
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy... 26 6.4
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17... 25 8.4
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 8.4
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 25 8.4
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 8.4
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 268 bits (657), Expect = 5e-73
Identities = 127/203 (62%), Positives = 158/203 (77%)
Frame = +1
Query: 124 ETNSVDNAWAMKIPKFTPDDNPHGLLEESKFATLFPKYREQYLKECWPLVQKILSEHHIV 303
+T+ +D+ W KI FT DD+ LEES FATLFPKYRE+YL+E WP V + L + I
Sbjct: 27 DTDDIDH-W--KIEPFTKDDSKESFLEESSFATLFPKYREKYLREVWPHVTRALDKFGIT 83
Query: 304 AELDLIEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVPFEQASRVLDDEIGCDIIKINS 483
LDL+EGS+TVKTTRKT+DPY I+ ARD +KLL+RSVPF QA +++ D + CDIIKI +
Sbjct: 84 CVLDLVEGSMTVKTTRKTFDPYSILDARDLIKLLARSVPFPQAVKIMQDGVACDIIKIGN 143
Query: 484 FVRKKETFLKRRQRLIGPQGVTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDT 663
+R KE F+KRRQRLIG G TLK++ELLT+CY+LVQG TV+ +G YKGL +VRRIVED
Sbjct: 144 ILRNKERFVKRRQRLIGTNGQTLKALELLTQCYILVQGTTVAVMGGYKGLKEVRRIVEDC 203
Query: 664 MKNIHPMYNIKSLMIKRELMKDP 732
M NIHP+Y+IK LMIKREL KDP
Sbjct: 204 MHNIHPIYHIKELMIKRELAKDP 226
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 566 NSMDFNVTP*GPINLCRLFKKVSFLRTNELILIMSHPISS 447
N+ F+ P PI+ CR+ ++ F N L+ P+S+
Sbjct: 96 NNYQFSTAPLNPIDACRVGERKVFTTGNVLLSADRQPLST 135
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 76 SLLATLNLIKTNMEVEETNSVDNAWAMKIP 165
S L TL+ I + ET ++AW KIP
Sbjct: 221 SNLVTLSKIMRQADASETGGQNSAWKQKIP 250
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +1
Query: 205 ESKFATLFPKYREQYLKECWPLVQKILSEHHIVAELDLIEGSLTVKTTRKTWDPY 369
ES+F+ L +R+ Y+K I ++ H V +L+ + RK ++ Y
Sbjct: 138 ESRFSRLEEAFRDFYIKNLEKTEDLIRTDSHFVLNKELLSFRNDYEHRRKHYEKY 192
>SPBC1773.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 586 KHSILLIIQWILM*HPEVLSTSAVSSKRFLFCEQ 485
KH +LL QW P+V T +S F + E+
Sbjct: 156 KHPLLLKYQWYWRVEPDVAFTCDISYDPFYYMEE 189
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 6.4
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
Frame = +1
Query: 67 KIISLLATLNLIKTNMEVEETNSVDNAWAMKIPKFTPDDNPHGLLEESKFATLFPKYREQ 246
K+ LL L + K + + + + W + P F+P + + + + P + +
Sbjct: 420 KLRLLLHELLVKKKALPELDKDLLKFVWVVDFPLFSPTEEKNQSITSTHHPFTAPHWDDV 479
Query: 247 YLKECWPLVQKILSEHHIVAELDLIEGSLTVKTTRKTWDPYIIIKARDFMKL-LSRSVPF 423
+L E PL + L +V ++L GS+ + +++ +D +KL +R F
Sbjct: 480 HLLEKKPLSVRGLHYDIVVNGIELGGGSIRIH--NPDIQRFVL---KDVLKLPENRYATF 534
Query: 424 EQASRVLDDEIGC 462
E RVL GC
Sbjct: 535 EHLIRVLSS--GC 545
>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 150
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 220 TLFPKYREQYLKECWPLVQKILSE 291
T+ P Y QYLK+ L+QK LSE
Sbjct: 3 TIVP-YSHQYLKDICQLIQKDLSE 25
>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 217 ATLFPKYREQYLKECWPLVQKILSEHHIVAELDLIEG 327
A + P+Y+EQY +E + K+++E I + D+ +G
Sbjct: 290 ANILPQYQEQYFEE----MPKLIAEGKIKYKCDVYDG 322
>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 268
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -2
Query: 530 INLCRLFKKVSFLRTNELILIMSHPISSSSTREACSNGTLLDNSFMKSR 384
IN+ R F + + I S P+S+S+ + CS GT+L S + +R
Sbjct: 8 INMQRSFSRQFHISVRNSIQ-SSKPLSNSTPLKGCSVGTILIRSPILTR 55
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.4 bits (53), Expect = 8.4
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Frame = +1
Query: 67 KIISLLATLNLIKTNMEVEE-TNSVDNAWAMKIPKFTPDDNPHGLLEESKFATLFPKYRE 243
K++SL+ + N I + E N W+ + F +DN L K +
Sbjct: 356 KLVSLIESFNNITMESVLTECLNDWSTTWS-SVSTFASEDNKLEELNRLKSLLSISSHLP 414
Query: 244 QYLKECWPLVQKILSEHHIVAELDLIEGSLTVKTTRKTWDPYI 372
+ L+ PL+ ILS+ +V + I+ + T T + YI
Sbjct: 415 KTLQLMEPLLDGILSQ--LVPKSSGIDSNSQKLLTSSTSNEYI 455
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 145 AWAMKIPKFTPDDNPHGLL 201
AW P TPD +P GLL
Sbjct: 553 AWGFMCPVHTPDGSPCGLL 571
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 526 LIGPQGVTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDTM 666
LIGP+G TLK +E + + ++G G + VR +E+ +
Sbjct: 206 LIGPRGHTLKDMEAKSGAKIAIRGKGSVKEGKGRSDPSVRGNMEEDL 252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,096
Number of Sequences: 5004
Number of extensions: 52479
Number of successful extensions: 167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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