Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1d13
(732 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016430-3|AAB65369.1| 370|Caenorhabditis elegans Hypothetical ... 279 1e-75
AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical ... 33 0.21
Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical p... 33 0.28
AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna bin... 31 0.84
AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna bin... 31 0.84
AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna bin... 31 0.84
AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 31 0.84
Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z46937-7|CAH10806.1| 109|Caenorhabditis elegans Hypothetical pr... 31 1.1
U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein. 31 1.1
U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical p... 31 1.1
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 29 3.4
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 29 3.4
>AF016430-3|AAB65369.1| 370|Caenorhabditis elegans Hypothetical
protein C05C8.2 protein.
Length = 370
Score = 279 bits (685), Expect = 1e-75
Identities = 129/197 (65%), Positives = 162/197 (82%)
Frame = +1
Query: 139 DNAWAMKIPKFTPDDNPHGLLEESKFATLFPKYREQYLKECWPLVQKILSEHHIVAELDL 318
D W I F+ +DNP+GLL+ES F++LFPKYRE+Y+KE WPL++K L EH + A+LDL
Sbjct: 41 DAEW-WDINTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHFLKADLDL 99
Query: 319 IEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKK 498
+EG++ V+TTRKTWDPYII+KAR+ +KLLSRSVP+EQA RVL+DEI C+IIKI+S VR K
Sbjct: 100 LEGTMCVRTTRKTWDPYIIMKAREVIKLLSRSVPYEQAIRVLEDEIYCEIIKISSMVRNK 159
Query: 499 ETFLKRRQRLIGPQGVTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDTMKNIH 678
E F+KRR RLIG G TLK++ELLT+CYV VQG TV AVGP GL Q+ +IV D MKNIH
Sbjct: 160 ERFVKRRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLAGLKQINQIVTDCMKNIH 219
Query: 679 PMYNIKSLMIKRELMKD 729
P+YNIK++MIKREL K+
Sbjct: 220 PIYNIKTMMIKRELSKN 236
>AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical
protein K07H8.9 protein.
Length = 254
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 523 RLIGPQGVTLKSIELLTECYVLVQGN 600
R+IGP+G T K +E T C ++++GN
Sbjct: 140 RIIGPRGTTAKQLEKDTGCRIMIRGN 165
>Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical
protein Y57G11C.36 protein.
Length = 380
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 523 RLIGPQGVTLKSIELLTECYVLVQGNT 603
RL+GP+G T K +E+ T C + + G T
Sbjct: 131 RLLGPRGTTAKQLEVTTGCRITILGRT 157
>AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform a protein.
Length = 328
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 523 RLIGPQGVTLKSIELLTECYVLVQG 597
R++GP+G+T K +E T C ++V+G
Sbjct: 107 RILGPRGMTAKQLEQETGCKIMVRG 131
>AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform c protein.
Length = 445
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 523 RLIGPQGVTLKSIELLTECYVLVQG 597
R++GP+G+T K +E T C ++V+G
Sbjct: 149 RILGPRGMTAKQLEQETGCKIMVRG 173
>AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform b protein.
Length = 403
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 523 RLIGPQGVTLKSIELLTECYVLVQG 597
R++GP+G+T K +E T C ++V+G
Sbjct: 107 RILGPRGMTAKQLEQETGCKIMVRG 131
>AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32a protein.
Length = 384
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 523 RLIGPQGVTLKSIELLTECYVLVQG 597
R++GP+G+T+K +E T C + V+G
Sbjct: 90 RILGPRGMTVKQLEKETGCRIFVRG 114
>Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical
protein T23G11.3 protein.
Length = 463
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 523 RLIGPQGVTLKSIELLTECYVLVQG 597
R++GP+G+T K +E T C ++V+G
Sbjct: 224 RILGPRGMTAKQLEQDTGCKIMVRG 248
>Z46937-7|CAH10806.1| 109|Caenorhabditis elegans Hypothetical
protein F43C1.7 protein.
Length = 109
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +1
Query: 535 PQGVTLKSI--ELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDTMKNIHPM 684
P G+T+ +I ELL EC LV+ N++ V K V+V +++ +K + M
Sbjct: 54 PSGITIDTIPEELLEECCQLVKKNSIQGVKMEK--VEVNYTLKENLKKVKGM 103
>U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein.
Length = 463
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 523 RLIGPQGVTLKSIELLTECYVLVQG 597
R++GP+G+T K +E T C ++V+G
Sbjct: 224 RILGPRGMTAKQLEQDTGCKIMVRG 248
>U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical
protein B0280.17 protein.
Length = 235
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = +1
Query: 523 RLIGPQGVTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVRRIVEDTMKNIHPMYNIKS 699
RLIGP+G+T++ +E C + ++G + + ++ R E + IH M +++S
Sbjct: 133 RLIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAKEERLRERVGWEHLKEPIHVMISVRS 191
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 526 LIGPQGVTLKSIELLTECYVLVQG 597
LIGP+G TLKS+E T ++++G
Sbjct: 323 LIGPRGNTLKSLEAETGAKIIIRG 346
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 526 LIGPQGVTLKSIELLTECYVLVQG 597
LIGP+G TLKS+E T ++++G
Sbjct: 323 LIGPRGNTLKSLEAETGAKIIIRG 346
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,271,502
Number of Sequences: 27780
Number of extensions: 279075
Number of successful extensions: 787
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -