Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1d12
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 97 2e-20
01_06_1796 - 39932487-39932633,39933150-39933201,39933370-399334... 42 5e-04
09_01_0112 + 1737438-1737777,1738441-1738511,1738974-1739052,174... 40 0.002
12_01_0794 + 7285100-7285369,7285931-7286338 33 0.21
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 32 0.37
11_03_0142 + 10675764-10675991,10676533-10676943 29 4.6
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 28 8.0
06_03_1464 + 30339369-30340220 28 8.0
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186... 28 8.0
05_01_0545 - 4756266-4757510 28 8.0
01_06_0671 - 31076463-31076610,31077060-31077202,31077758-310779... 28 8.0
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 96.7 bits (230), Expect = 2e-20
Identities = 40/85 (47%), Positives = 53/85 (62%)
Frame = +3
Query: 432 NAPAPDVAPSANQSSPWSEHKAPDGRTYYYNSVTKQSLWEKPDDLKTSAEKLLSACVWKE 611
+A P + S SS W EH + DG+ YYYN T+QS WEKP +L T E+ ++ WKE
Sbjct: 95 SATMPSINSSETSSSDWQEHTSADGKKYYYNKKTRQSSWEKPAELMTPLERADASTEWKE 154
Query: 612 YTTNTGRLYYHNIETKESSWVVPKE 686
+TT GR YY+N TK+S W +P E
Sbjct: 155 FTTQEGRKYYYNKVTKQSKWTIPDE 179
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/40 (52%), Positives = 26/40 (65%)
Frame = +3
Query: 462 ANQSSPWSEHKAPDGRTYYYNSVTKQSLWEKPDDLKTSAE 581
A+ S+ W E +GR YYYN VTKQS W PD+LK + E
Sbjct: 146 ADASTEWKEFTTQEGRKYYYNKVTKQSKWTIPDELKIARE 185
>01_06_1796 -
39932487-39932633,39933150-39933201,39933370-39933495,
39933645-39933743,39934039-39934258,39934599-39934764,
39935108-39935161,39935527-39935657,39935747-39935818,
39936524-39936602,39936705-39936783,39936868-39936902,
39936986-39937111
Length = 461
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Frame = +3
Query: 420 KPELNAPAPDVAPSANQSSPWSEHKAP-DGRTYYYNSVTKQSLWEKPD-DLKTSAEKLLS 593
K +++P + + W E K P G +Y+YN T + W++P L T +
Sbjct: 172 KQNVDSPVGQIKAAQELPPGWVEAKDPTSGASYFYNQSTGTTQWDRPGAPLNTMQHQAPP 231
Query: 594 ACV----WKE-YTTNTGRLYYHNIETKESSWVVP 680
+ W+E +TG+ YY+N T+ + W P
Sbjct: 232 SSSLPENWEEALDQSTGQKYYYNTNTQATQWEPP 265
>09_01_0112 +
1737438-1737777,1738441-1738511,1738974-1739052,
1741559-1741641,1741733-1741784,1742038-1742105,
1742279-1742345,1742426-1742505,1742576-1742640,
1742785-1742847,1743271-1743427,1743511-1743588,
1743677-1744219,1744321-1744497,1744534-1744788,
1745270-1745329,1745874-1745888,1746123-1746135,
1746819-1746934
Length = 793
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3
Query: 438 PAPDVAPSANQSSPWSEHKAPDGRTYYYNSVTKQS 542
P +P+ + W+EH +P+G YYYNS+T++S
Sbjct: 606 PQQATSPAVPLTCNWTEHTSPEGFKYYYNSITRES 640
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 597 CVWKEYTTNTGRLYYHNIETKES 665
C W E+T+ G YY+N T+ES
Sbjct: 618 CNWTEHTSPEGFKYYYNSITRES 640
>12_01_0794 + 7285100-7285369,7285931-7286338
Length = 225
Score = 33.1 bits (72), Expect = 0.21
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +3
Query: 438 PAPDVAPSANQSSPWSEHKAPDGRTYYYNSVTKQSLWEKPDDLKTSAEKLLSACV--WKE 611
PAP S +S+ S ++ DG + K WE+P +L W++
Sbjct: 30 PAPGFVSSTTKSTKSSSSES-DGSS---RKKRKHFTWEEPVSHANLELQLNDPLPLDWEQ 85
Query: 612 -YTTNTGRLYYHNIETKESSWVVPKE 686
+GR+YY N +T + SW+ PKE
Sbjct: 86 CLDLQSGRMYYLNRKTLKKSWIRPKE 111
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 32.3 bits (70), Expect = 0.37
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 588 LSACVWKEYTTNTGRLYYHNIETKESSWVVPKE 686
L+ W TT+ G+ YY++ + K SSW +P E
Sbjct: 489 LAGTDWSIVTTSDGKKYYYDNKLKVSSWQLPPE 521
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 480 WSEHKAPDGRTYYYNSVTKQSLWEKPDDL 566
WS DG+ YYY++ K S W+ P ++
Sbjct: 494 WSIVTTSDGKKYYYDNKLKVSSWQLPPEV 522
>11_03_0142 + 10675764-10675991,10676533-10676943
Length = 212
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 621 NTGRLYYHNIETKESSWVVPKE 686
++GR+YY N +T SWV P E
Sbjct: 76 HSGRMYYLNRKTMRKSWVRPME 97
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 392 NTTARIPCIQTGIKCSCTRCCSIGKS 469
N + +P +Q KC T+CC+ G S
Sbjct: 495 NCNSHLPSVQVPPKCQKTQCCANGMS 520
>06_03_1464 + 30339369-30340220
Length = 283
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = +2
Query: 293 ARCGNATSAWVTSKYGYITTAHGLSSHVAASIFNTTARIPCIQTGIKCSCTRCCSI 460
+R G SA G + + +++ +A++FNT A + + CSC + ++
Sbjct: 168 SRLGLGGSAAEVEVTGLLMESAAVTAAASATLFNTVASMSASASAAACSCRKTAAL 223
>06_03_0927 +
26015956-26018230,26018323-26018471,26018550-26018618,
26018701-26018853,26018927-26019090,26019207-26019354,
26020348-26020470,26020560-26020647,26020781-26020950
Length = 1112
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +3
Query: 423 PELNAPAPDVAPSANQSSPWSEHKAPDGRTYYYNSVTKQSLWEKPDDLKTSAEK 584
P+LN PA DVA +Q S + GR + +T L D L TS K
Sbjct: 729 PDLNIPAEDVA--LHQQSDHKDAHTEHGRFIKGDDMTSPDLVSVEDSLPTSNTK 780
>05_01_0545 - 4756266-4757510
Length = 414
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 294 AALVEAYRLALEAVKEEARLRDPENWSPHWVAP 196
A L +AY +AL+ K+ A DP+N + WV P
Sbjct: 44 ARLRDAY-VALQTWKQTAIFSDPKNLTADWVGP 75
>01_06_0671 -
31076463-31076610,31077060-31077202,31077758-31077963,
31078119-31078644,31078753-31078854,31079572-31079637,
31079710-31079822,31080260-31080345,31081007-31081146
Length = 509
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +3
Query: 459 SANQSSPWSEHKAPDGRTYYYNS----VTKQSLWEKPDDLKTSAE 581
S + +S SEH D RTY ++ + + W+K D +K +AE
Sbjct: 228 SLSSTSTSSEHSVTDARTYCSSNEDEDLMLEQSWQKYDSVKRNAE 272
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,882,567
Number of Sequences: 37544
Number of extensions: 332758
Number of successful extensions: 996
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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