Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1d12
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    23   2.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.3  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    22   6.3  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 459 MEQHLVQEHLIPV*MQGILAV 397
           M   L+ + +IPV M GI+A+
Sbjct: 46  MRPELIMKSIIPVVMAGIIAI 66


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 633 LYYHNIETKESSWV 674
           LY+H++ ++  SWV
Sbjct: 263 LYFHSLASRVESWV 276


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 579 QLTFLSRQVFPT-SFVWLQNYSNMFFHQGPYVQ 484
           ++T L   VF   + V  Q+YS +F   GPY++
Sbjct: 2   RITILILLVFTVLATVSSQDYSQLFAGFGPYIR 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,156
Number of Sequences: 438
Number of extensions: 3510
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)