Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1d10
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    31   0.14 
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    26   3.0  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   5.2  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   6.9  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   6.9  
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    25   9.1  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    25   9.1  

>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 148 KLPAP*L-VKKSRRVGLRVVPGVASRNIGDYKRKIYLRDNK 267
           K+  P L VKK+ RV   + P  A RN  D++RK+  RDN+
Sbjct: 219 KMRGPILPVKKNLRVKKAMSPLRAERNSPDFRRKLRSRDNR 259


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 235 NHQYFGLQPPGQRGGRHDDF 176
           NHQY GL+    RG ++D F
Sbjct: 209 NHQYMGLRKDRVRGEQYDSF 228


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 404 QIMTTLNSTRYHYIK 448
           Q+MTT++ST  HYI+
Sbjct: 630 QLMTTVSSTNVHYIR 644


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 358 IVFFLQQLTSIVLNNSHANHHHRLRVEDAIIYYLVNKF 245
           + FF   LT I+LN   A+H+ +  ++D+   + + K+
Sbjct: 185 VSFFNGGLTKIILNPKDASHYEQ-HIDDSSYLFSLKKY 221


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 83  QKFPFNHEEKQSFVD 127
           QKFPF+H+E+Q   D
Sbjct: 328 QKFPFHHKEQQFLKD 342


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 145 YKLPAP*LVKKSRRVGLRVVPGVASRNIGDYKRK 246
           YKL    LV K+    LR VP V +  +GD+ R+
Sbjct: 307 YKLSVNDLVIKATTAALRQVPEVNAAWMGDFIRQ 340


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 178 SRRVGLRVVPGVASRNIGDYK 240
           S+R G   VPGV+  NIG  K
Sbjct: 478 SKREGFATVPGVSWNNIGALK 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,783,087
Number of Sequences: 5004
Number of extensions: 29731
Number of successful extensions: 73
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)