Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1d10
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97592-5|AAB52873.1|  597|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched rela...    29   2.7  
Z81585-1|CAB04681.2|  343|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U97592-5|AAB52873.1|  597|Caenorhabditis elegans Hypothetical
           protein C14A11.6 protein.
          Length = 597

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 190 RHDDFFLQARALATCSNRQSKIHKRLFFFMIKRKFLANYDFIVPVKLTTF*WV 32
           R+D   L  R L   SN QS++     FF I +K    + + +P+    F W+
Sbjct: 65  RNDTMELMTRKLIRVSNNQSQLVSFWIFFFISQKHFLRHTYKMPICSFQF-WI 116


>AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched related
           family protein 15 protein.
          Length = 840

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 292 RLRVEDAIIYYLVNKFFVYNHQYFGLQPPGQRG 194
           R+++E   + +  NKFF+  H ++G+QP G  G
Sbjct: 168 RIKIEYPTMKFFDNKFFLPTH-FYGVQPGGPLG 199


>Z81585-1|CAB04681.2|  343|Caenorhabditis elegans Hypothetical
           protein T05E12.1 protein.
          Length = 343

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -3

Query: 178 FFLQARALATCSNRQSKIHKRLFFFMIKRKFLANYDFIVPV 56
           FF   +   T S +  ++H++LFF +  +  L      +PV
Sbjct: 224 FFYMKKFSFTMSQKTKELHRQLFFTLTLQTLLPGITMFIPV 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,953,663
Number of Sequences: 27780
Number of extensions: 170814
Number of successful extensions: 356
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)