Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1d02
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    30   0.37 
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    26   4.5  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   4.5  
SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofacto...    26   4.5  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    26   6.0  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    26   6.0  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.9  

>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -1

Query: 265 RYVSRLSERFVSSVGTF*FLSVN*SNNGNRKLSIDDYFRINVSTITNAAFILYS 104
           RY S  S R +SS     F+S   S    +KL I +Y +   ST++N  F L S
Sbjct: 533 RYPSDKSPRVISSYLESVFISKPRSIGDAQKLEILEYLQSQSSTVSNQVFTLLS 586


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 579 REISSHLCENRYRNQQIREDFPVAVNEQKDLEHEAR 686
           + ++SHL + +  NQQ+R     A +E  +LE+E R
Sbjct: 421 KALTSHLEQLQQENQQLRMLLADADSEMMNLEYEIR 456


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 530 FAQIRYVSELRHSIACLKPCHRSCATLESRDFPQRLS 420
           F  IR  SEL    + L+ C    A  E  +FPQ+LS
Sbjct: 506 FHIIRSFSELTKFQSSLEGCLNLAAYYEDAEFPQKLS 542


>SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofactor
           B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 464 NDGRVSGKRYYAEVRTRNGS 523
           NDG VSGKRY+   + ++GS
Sbjct: 195 NDGTVSGKRYF-NAKNKHGS 213


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 558 LAHRLQDREISSHLCENRYRNQQIREDFP 644
           LAH + +R  ++ +  N Y  ++IR D+P
Sbjct: 208 LAHEIYNRLQANGIACNLYTGEEIRNDYP 236


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +1

Query: 583 RYLLTSARIGIEINRSAKIFLSPSTNRKTSSTKLVCV 693
           +++    R  ++I      F+ PSTNR++     +C+
Sbjct: 318 KHIQQETRTRVQIKGQGSAFIEPSTNRESDEPIHLCI 354


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 3   ATKYDYMTKVFVLENMLALLDNVITKYTCTVLSKE 107
           A+ YD + K+ + E    L+ N+   +TC V+  E
Sbjct: 464 ASSYDVVNKIRLNEMSPMLIMNISVAFTCIVMGLE 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,313
Number of Sequences: 5004
Number of extensions: 60465
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)