Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1d02
         (703 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    25   1.7  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    24   4.0  
U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette...    23   7.0  

>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
 Frame = +3

Query: 519  DLREQWL--VRTDGALAHRLQDREISSHLCENRYRNQQI--RE--DFPVAVNEQKDLEHE 680
            ++RE+ +  V  D  L H LQ ++  S++CE   +   I  RE  DF  ++ EQ  L   
Sbjct: 982  EVRERLMDGVNPDTLLTHMLQSQQNWSNVCEAAKQITTILQREWDDFRTSLFEQGVLADN 1041

Query: 681  ARLR 692
            A+LR
Sbjct: 1042 AQLR 1045


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 479 SGKRYYAEVRTRNGSARTVACAHRRSACSSFARPR 583
           SG+    ++ +R+G    +A  ++ + CS +A PR
Sbjct: 58  SGRFPIQQIISRHGEGYVIAVINKITFCSCYAPPR 92



 Score = 23.4 bits (48), Expect = 7.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 471 PSFVRNARKSRLSTTFVFKRKCGVALAA 388
           P+FVRN+R S +  TF     C  ALA+
Sbjct: 158 PTFVRNSRTSIIDLTF-----CSPALAS 180


>U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 673

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 467 RSCATLESRDFPQRLSLSENV 405
           RSC T + +DF  R  L +NV
Sbjct: 77  RSCCTRQRKDFNPRKHLLKNV 97


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 725,564
Number of Sequences: 2352
Number of extensions: 14424
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71504505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)