Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1d02
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23174-1|AAM97991.1|  161|Caenorhabditis elegans Hypothetical pr...    36   0.037
U23183-3|AAA64340.3|  496|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U58738-3|AAQ81272.1|  349|Caenorhabditis elegans Apex-related ge...    29   3.2  
U58738-2|AAQ81271.1|  357|Caenorhabditis elegans Apex-related ge...    29   3.2  
U50143-1|AAB02199.1|  349|Caenorhabditis elegans ARG-1 protein.        29   3.2  
AF026209-4|AAW88411.1|  317|Caenorhabditis elegans Serpentine re...    28   5.6  
AF026209-3|AAK72080.3|  187|Caenorhabditis elegans Serpentine re...    28   5.6  
U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U40935-3|AAA81689.1|  334|Caenorhabditis elegans Rfc (dna replic...    28   7.4  
CU457740-8|CAM36338.1|  362|Caenorhabditis elegans Hypothetical ...    27   9.8  
AC084153-13|AAK84583.1|  123|Caenorhabditis elegans Hypothetical...    27   9.8  

>U23174-1|AAM97991.1|  161|Caenorhabditis elegans Hypothetical
           protein R10H1.1 protein.
          Length = 161

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +3

Query: 468 MAGFQASDTMPKFGHVTDLREQWLVRTDGALAHRLQDREISSHLCENRYRNQQIREDFPV 647
           M+  Q  DT P FG   ++R++     D  LAHRLQ+RE   +   NR  N  I  D   
Sbjct: 1   MSKQQEQDT-PSFG---EIRQRLQAGEDFDLAHRLQEREYEMYYNHNRNVNGTIVGDRKK 56

Query: 648 AVNEQ-KDLEHEARLR 692
              EQ  + EH A LR
Sbjct: 57  TREEQIAEDEHAASLR 72


>U23183-3|AAA64340.3|  496|Caenorhabditis elegans Hypothetical
           protein K01A12.3 protein.
          Length = 496

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -2

Query: 195 SQTMETENYLSMITFELMYPPSLTQLLYYILCLKPYMY 82
           ++ + T N+ + +TF+  YP  L  +  ++  +KPY +
Sbjct: 274 NEIIVTGNFKARLTFQFFYPSILCTISTFLFFIKPYAF 311


>Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical
           protein K01C8.2 protein.
          Length = 389

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 490 ILCRSSDT*RICANSGLCAPTERLLIVCKTARYLLTSA 603
           I CRSS + RIC+N+ +   T   L +C T     +SA
Sbjct: 172 ICCRSSSSQRICSNNQIALITNGALEMCTTPGTQCSSA 209


>U58738-3|AAQ81272.1|  349|Caenorhabditis elegans Apex-related genes
           protein 1, isoformb protein.
          Length = 349

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 517 RICANSGLCAPTERLLIVCKTARYLLTS-ARIGIEINRSA 633
           R+C + G C    R  + CK  R  L S   IGI  N SA
Sbjct: 233 RVCKHGGTCVSVNRTNVQCKCIRGFLGSLCEIGIHGNCSA 272


>U58738-2|AAQ81271.1|  357|Caenorhabditis elegans Apex-related genes
           protein 1, isoforma protein.
          Length = 357

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 517 RICANSGLCAPTERLLIVCKTARYLLTS-ARIGIEINRSA 633
           R+C + G C    R  + CK  R  L S   IGI  N SA
Sbjct: 220 RVCKHGGTCVSVNRTNVQCKCIRGFLGSLCEIGIHGNCSA 259


>U50143-1|AAB02199.1|  349|Caenorhabditis elegans ARG-1 protein.
          Length = 349

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 517 RICANSGLCAPTERLLIVCKTARYLLTS-ARIGIEINRSA 633
           R+C + G C    R  + CK  R  L S   IGI  N SA
Sbjct: 233 RVCKHGGTCVSVNRTNVQCKCIRGFLGSLCEIGIHGNCSA 272


>AF026209-4|AAW88411.1|  317|Caenorhabditis elegans Serpentine
           receptor, class h protein2, isoform b protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/73 (24%), Positives = 36/73 (49%)
 Frame = -1

Query: 238 FVSSVGTF*FLSVN*SNNGNRKLSIDDYFRINVSTITNAAFILYSLLKTVHVYFVITLSS 59
           F S + T+  L V+ ++   RK+  + +  + VSTIT+   +   L     +  ++   S
Sbjct: 211 FSSGIVTYKALKVSRASAAVRKIQKNIFMSLVVSTITHLGLLFIPLATFFMLSLLVPEWS 270

Query: 58  NASIFSKTNTFVI 20
            +SI   T+ F++
Sbjct: 271 KSSIVKYTSDFMV 283


>AF026209-3|AAK72080.3|  187|Caenorhabditis elegans Serpentine
           receptor, class h protein2, isoform a protein.
          Length = 187

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/73 (24%), Positives = 36/73 (49%)
 Frame = -1

Query: 238 FVSSVGTF*FLSVN*SNNGNRKLSIDDYFRINVSTITNAAFILYSLLKTVHVYFVITLSS 59
           F S + T+  L V+ ++   RK+  + +  + VSTIT+   +   L     +  ++   S
Sbjct: 81  FSSGIVTYKALKVSRASAAVRKIQKNIFMSLVVSTITHLGLLFIPLATFFMLSLLVPEWS 140

Query: 58  NASIFSKTNTFVI 20
            +SI   T+ F++
Sbjct: 141 KSSIVKYTSDFMV 153


>U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical
           protein C37H5.5 protein.
          Length = 778

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +2

Query: 272 KYILSCCKSVCDVTSTD*CRHRPTIYVRNSRVDNEFV*RAANATPHFRLKTNVVESLDFL 451
           KY+  C K    +   D      T   +   +  + + R   + PHF   TN+V SL  L
Sbjct: 297 KYLQLCEKLSNKLVGKDRHNDESTFTFKMGILSVKALARIVVSAPHFNYSTNIVSSLVRL 356

Query: 452 ALRTND 469
           +L  N+
Sbjct: 357 SLAKNE 362


>U40935-3|AAA81689.1|  334|Caenorhabditis elegans Rfc (dna
           replication factor) familyprotein 4 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -1

Query: 358 IPDVNSWTMTALVSASNIA--YTLTTR*YVFVCRYVSRLSERFVSSVGTF*FLSV 200
           + +V++ T  A  +   +   ++ TTR ++ +C YVSRL    VS    F F S+
Sbjct: 124 LDEVDAMTREAQAAMRRVIEDFSKTTR-FILICNYVSRLIPPVVSRCAKFRFKSL 177


>CU457740-8|CAM36338.1|  362|Caenorhabditis elegans Hypothetical
           protein C50E10.8 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +3

Query: 267 HTNTYYRVVRVYAMLLALTSAVIVQLFTSGIVVLT 371
           +   +Y+ + ++ +LL+LT  V+V   TSG ++LT
Sbjct: 24  YNQKFYQFLLIFELLLSLT--VLVFTITSGFIILT 56


>AC084153-13|AAK84583.1|  123|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.1 protein.
          Length = 123

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 118 FILYSLLKTVHVYFVITLSSNASIFSKTNTFVI 20
           FI Y LLK V + F+I   S   +  K +T ++
Sbjct: 80  FIFYVLLKIVVIVFIIGYYSKYGVADKNSTIIV 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,061,275
Number of Sequences: 27780
Number of extensions: 339461
Number of successful extensions: 965
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)