Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1d01
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    30   0.39 
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    28   1.6  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    27   2.1  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    26   4.8  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   4.8  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   8.4  

>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 3/156 (1%)
 Frame = +3

Query: 18  QRRKLQY*RDDSKSRLADMRKKLVPEEKPIC---NAVAVFRERGNYLQRLEQFEKAIQAY 188
           QR   ++   D  SRL D  K    +++      +     R +GN L +   F  AI+ Y
Sbjct: 363 QRSLTEHRTPDILSRLKDAEKSKELQDREAYIDPDKAEESRVKGNELFKSGDFANAIKEY 422

Query: 189 NEALRWNSSDVRSLIGRSVARAKSTYYNGXXXXXXXXXXXXPSNLTALQIRAQTEYEKCA 368
            E  +   SD R    R+ A  K                  P+   A   +AQ  +    
Sbjct: 423 TEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKAYVRKAQALFMLKD 482

Query: 369 FERALVMAHQGQRLVRFPPDFAECARHAEETIRECV 476
           + + +   ++   + R  P+  +  R  E  + +C+
Sbjct: 483 YNKCIDACNEASEVDRREPNTGKNLREIESQLSKCM 518


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 141 NYLQRLEQFEKAIQAYNEALRWNSSDVRSLIGRSVARA 254
           NYL R+E  E ++   N  L  + S++ +L  +S++ A
Sbjct: 225 NYLSRIEMLESSLAKSNSLLDSSKSEMEALKAKSISDA 262


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 138 GNYLQRLEQFEKAIQAYNEALRWNSS--DVRSLIGRSVARAKSTY 266
           GNY   L + EKA+  +  AL+ N +     +L+G      K+T+
Sbjct: 345 GNYYSLLSEHEKAVTYFKRALQLNRNYLSAWTLMGHEYVELKNTH 389


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = +3

Query: 147 LQRLEQFEKAIQAYNEALRWNSSDVRSLIGRSVARAKSTYYN 272
           L+R + + KAIQ+Y++A++++  +  +  G ++  A++  ++
Sbjct: 644 LKRQKLYIKAIQSYDQAIKFDPKNAHAAQGIAIILAQNRQFS 685


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 135 RGNYLQRLEQFEKAIQAYN 191
           R NY  RLE++++ I +YN
Sbjct: 910 RANYSTRLEEYQRQINSYN 928


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 75  RKKLVPEEKPICNAVAVFRERGNYLQRLEQFEKAIQAYNEALRWNSSDVRSLIGRS 242
           RKKL PEE  +       R +    +RLE  E+ ++  N  L+  S+  +   GR+
Sbjct: 191 RKKLTPEEMALRRIENARRRKNQSERRLE--EEKMETINRLLKRQSNTGKPRRGRA 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,629
Number of Sequences: 5004
Number of extensions: 53871
Number of successful extensions: 192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)