Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1d01
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 31 0.71
06_01_0449 - 3176135-3176329,3176531-3177289,3177420-3177905,317... 31 0.94
08_02_1577 + 27985066-27985434,27985520-27985594,27986159-279863... 30 1.6
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 29 2.9
01_05_0706 + 24457148-24458031,24458621-24458822,24458896-244590... 29 2.9
03_05_0859 - 28329837-28329919,28330062-28330131,28330498-283305... 29 3.8
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 28 6.6
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 6.6
01_06_0717 - 31446860-31447074,31447183-31447270,31448909-314490... 28 6.6
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 31.5 bits (68), Expect = 0.71
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 129 RERGNYLQRLEQFEKAIQAYNEALRWNSSDVRSLIGRSVARAK 257
RE+GN L + +++ A++ Y EA+R N D + R+ K
Sbjct: 417 REKGNQLFKEQKYPDAVKHYTEAIRRNPKDPKVYSNRAACYTK 459
>06_01_0449 -
3176135-3176329,3176531-3177289,3177420-3177905,
3178302-3178421,3178637-3178703,3178784-3179007,
3179149-3179234,3179936-3180509
Length = 836
Score = 31.1 bits (67), Expect = 0.94
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 69 DMRKKLVPEEKPICNAVAVFRERGNYLQRLEQFEKAIQAYNEALRWNSSDVRSLIGRS 242
+ RK++ E+ A R+RGN + +++++A Y EA++ N D R R+
Sbjct: 169 EARKEIEERERLDQEAADHHRDRGNDFFKQKRYQEAAMHYTEAMKKNPKDPRVFSNRA 226
>08_02_1577 +
27985066-27985434,27985520-27985594,27986159-27986320,
27986415-27986590,27986681-27986756,27987154-27987282,
27987363-27987482,27987734-27987815,27988016-27988110,
27988427-27988491,27988604-27988802,27989426-27989620,
27989866-27989960,27990059-27990194,27990265-27990482,
27990729-27990856,27991148-27991617
Length = 929
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 141 NYLQRLEQFEKAIQAYNEALRWNSSDVRSLIGRSV 245
N L+ +F +A+Q YN L + ++V +LIG+ +
Sbjct: 42 NILRSRNKFAEALQLYNNVLEKDEANVEALIGKGI 76
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 102 PICNAVAVFRERGNYLQRLEQFEKAIQAYNEAL 200
P+ N +FR RG++L ++ E A AY+ A+
Sbjct: 2963 PVKNKAEIFRLRGDFLLKMNDCENANVAYSNAI 2995
>01_05_0706 +
24457148-24458031,24458621-24458822,24458896-24459080,
24459170-24459503,24459614-24459818,24460022-24460128,
24460220-24460381
Length = 692
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 153 RLEQFEKAIQAYNEALRWNSSDVRSLIGRSVARAK 257
+LE++EKA+ NEALR + ++L+ R+ + AK
Sbjct: 501 KLERWEKAVDDCNEALRIQPNYTKALLRRASSYAK 535
>03_05_0859 -
28329837-28329919,28330062-28330131,28330498-28330549,
28330671-28330798,28331283-28331483,28332183-28332317,
28333116-28333275,28333824-28334019,28334070-28334252,
28334382-28334507,28335090-28335214,28335389-28335541,
28337267-28337472
Length = 605
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 114 AVAVFRERGNYLQRLEQFEKAIQAYNEALRWNSSDVRSLIGRSVA 248
A +E+GN + +Q++KAI Y EA++ N+ R+ A
Sbjct: 488 AAEAAKEKGNIAFKEKQWQKAINFYTEAIKLNNKVATYYSNRAAA 532
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 138 GNYLQRLEQFEKAIQAYNEALRWNSSDVRSLIGRSVARAK 257
GN + +++ +A++ Y+EALR N D R R+ K
Sbjct: 570 GNEFFKQQKYPEAVKHYSEALRRNPKDPRVYSNRAACYTK 609
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/95 (20%), Positives = 40/95 (42%)
Frame = +3
Query: 114 AVAVFRERGNYLQRLEQFEKAIQAYNEALRWNSSDVRSLIGRSVARAKSTYYNGXXXXXX 293
A + +E+GN + ++ KA++ Y++A++ N ++ R+ A + Y
Sbjct: 463 AAELLKEKGNSAFKGRKWSKAVEFYSDAIKLNGTNATYYSNRAAAYLELGRYKQAEADCE 522
Query: 294 XXXXXXPSNLTALQIRAQTEYEKCAFERALVMAHQ 398
+ L ++A Y + R V+ HQ
Sbjct: 523 QALLLDKKIIYVLNVKA---YLRRGIAREAVLNHQ 554
>01_06_0717 - 31446860-31447074,31447183-31447270,31448909-31449012,
31449618-31449745,31450461-31450555,31461823-31463115,
31463188-31464039,31464568-31464621
Length = 942
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 522 RRVELNKESIDLDASRALKHRSR-MQAQETQQVQEISRAEKQKYEQISRLMASKYLERMA 698
RR +L E DAS A + R MQ +E ++ +E+ R EK++ +I E+M
Sbjct: 866 RRPDLKAEK---DASNAAEKAERKMQLKEKRRREEMERLEKERRAEIRSYKGLMVAEKMT 922
Query: 699 HDK 707
++
Sbjct: 923 SNR 925
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,799,792
Number of Sequences: 37544
Number of extensions: 335039
Number of successful extensions: 800
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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