Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1c22
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032624-2|CAA21520.2|  447|Caenorhabditis elegans Hypothetical ...    57   1e-08
Z49070-3|CAA88871.2|  223|Caenorhabditis elegans Hypothetical pr...    32   0.35 
AC024200-7|AAF36006.1|  332|Caenorhabditis elegans Hypothetical ...    31   1.1  
AC024845-5|AAF60848.1|  719|Caenorhabditis elegans Hypothetical ...    28   5.6  
U40427-1|AAA81467.2|  798|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AL032624-2|CAA21520.2|  447|Caenorhabditis elegans Hypothetical
           protein Y49A10A.1 protein.
          Length = 447

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
 Frame = +1

Query: 391 HILRKVDIFFFLEDGTIKVIEPKTENSGLSQGTLISRQRIRLPFSYDM-YYDVLDLNIGR 567
           H +R   I + L D TI V EP  +N+G   G +  RQ++         Y    DLN+G 
Sbjct: 96  HRIRIFKINYHLNDDTITVNEPFVDNTGYLHGRIFRRQKVPAHNRIGKPYVHWSDLNVGT 155

Query: 568 EVTFYGKTFKIVNCDNFTRVFLNRLGINVPDPIPWPD 678
           ++  +   ++I +CD FTR FL   G  V +    P+
Sbjct: 156 DINLFQTIYRITSCDTFTRSFLEEHGTKVNEDEELPE 192


>Z49070-3|CAA88871.2|  223|Caenorhabditis elegans Hypothetical
           protein T09F3.4 protein.
          Length = 223

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 5/146 (3%)
 Frame = +1

Query: 220 IDKVNMLVDKAEGVNKVPSMYSRKQAPDLPTWIMYDKNILRF---QGFFQQSLHEMRSAS 390
           +DK    V K     K P +    + P   +W    K   RF       QQS+ ++R A 
Sbjct: 38  LDKAAQNVLKGRSWAKAPVLEVSGRKPPA-SWQRSSKKGQRFFDQNEQIQQSVVKLRWAD 96

Query: 391 HILRKVDIFFFLEDGTIKVIEPKTENSGLSQGTLISRQRIRLPFSYDMYYDVLD--LNIG 564
              R VD+    +D T+  +E K    G+ Q   ++  +IR+  + ++   V +      
Sbjct: 97  FAERDVDVLLTSQDETLYTVEVKAVLYGIIQAIHLNETKIRMKSANEVVVRVANKRYTAS 156

Query: 565 REVTFYGKTFKIVNCDNFTRVFLNRL 642
           +E   +    ++VN  N T+   N+L
Sbjct: 157 KEAASFHLITRVVN-GNDTKSRENQL 181


>AC024200-7|AAF36006.1|  332|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.8 protein.
          Length = 332

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
 Frame = +1

Query: 298 PDLPTWIMYD-----KNILRFQGF--FQQSLHEMRSASHILRKVDIFF-FLEDGTIKVIE 453
           P+   WIM D     +N LR Q F   ++ LH+  +  HI+R V  FF F E      ++
Sbjct: 245 PNKADWIMIDVKKFTENHLRMQYFRKIREELHKRFTNQHIIRAVFCFFQFFEYYVTVCVD 304

Query: 454 PKTEN 468
             T+N
Sbjct: 305 ESTDN 309


>AC024845-5|AAF60848.1|  719|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.5 protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +1

Query: 328 KNILRFQGFF--QQSLHEMRSASHILRKVDIFFFLEDGTIKVIEPKTENSGLSQGTLISR 501
           K  + F+G++  +Q   E       L   DI  +  +GT+K+++ K     LSQG  ++ 
Sbjct: 533 KGHIIFKGYYKNEQQTKETIDEDGWLHTGDIGRWTPEGTLKIVDRKKHIFKLSQGEYVAP 592

Query: 502 QRI 510
           ++I
Sbjct: 593 EKI 595


>U40427-1|AAA81467.2|  798|Caenorhabditis elegans Hypothetical
           protein F43C9.3 protein.
          Length = 798

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 302 IFQLGSCMIRTFYGFKGSFNNHCMKCGQHLIFYVK 406
           +F++   ++R F     ++NN C K   H +F  K
Sbjct: 338 LFKISITILRPFLTANNAYNNQCSKAVLHYMFQTK 372


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,750,925
Number of Sequences: 27780
Number of extensions: 294671
Number of successful extensions: 667
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)