Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1c21
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z79603-5|CAB01891.1|  435|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
           protein Y43D4A.5 protein.
          Length = 1648

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
 Frame = +2

Query: 569 NNPAKIGMG---PEIINMVMGSSGNKPKIQESHIAGQVPSSPSRLQ-----GASAQQGFI 724
           N PA  G+    P       GS+         H+     SSPS L       AS+Q G  
Sbjct: 609 NGPAPSGLAQAFPGSFGSPPGSNTGSVSFGSGHVPSDFGSSPSDLAPAAPGSASSQPGLS 668

Query: 725 DGPSAIGDG 751
           DGP + G G
Sbjct: 669 DGPLSFGSG 677


>Z79603-5|CAB01891.1|  435|Caenorhabditis elegans Hypothetical
           protein M163.5 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +2

Query: 380 YADTYNYLNEKLMQPVVKEVYHDLNTISPANTVMNNPIASQIGLPLQSGQTPLNNLTQNI 559
           Y+    +LN+       K V+ +    S   +   NP+  Q+ LP      P  +LT   
Sbjct: 265 YSSFNRHLNKNSTNSKPKSVHSESRDSSKQRSTTTNPVQKQVDLP-----KPKADLTTKH 319

Query: 560 PSVNNPAKI 586
            S N+P K+
Sbjct: 320 SSSNSPHKL 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,037,002
Number of Sequences: 27780
Number of extensions: 353734
Number of successful extensions: 909
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)