Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1c20
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899...    63   2e-10
01_06_1235 - 35602548-35602594,35603057-35603060,35603186-356032...    58   6e-09
12_01_0499 - 3959843-3960058,3960158-3960235,3960315-3960389,396...    31   0.98 
11_06_0655 - 25923171-25923185,25923208-25923432,25923865-259243...    29   3.9  
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403...    28   6.9  
09_01_0100 + 1523835-1524611                                           28   9.1  
04_04_1379 + 33113374-33113529,33114046-33114143,33114811-331148...    28   9.1  

>05_05_0155 +
           22787658-22787930,22788029-22788096,22789600-22789915,
           22790207-22790323
          Length = 257

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 34/118 (28%), Positives = 55/118 (46%)
 Frame = +2

Query: 389 GTSVGHTMNIYYCYSCGYKKVFEDYAGIIQQKYPEISVIGANYDPPGFNMYLSRIIGFGK 568
           G   G T+ + +C SC YK        +++  +P I VI  NY PP     L +++   +
Sbjct: 96  GAGYGTTVELQFCASCSYKGTAMTMKRMLETSFPGIHVILHNYPPPFPKRVLGKLVPILQ 155

Query: 569 MLVIMCILSGVNIFAWLNKPQPAWWSWCLENKLYACMMMFFLANMIEGQLISSGAFEI 742
           +  I  I++G +IF  L    P W+     N+      ++   N  +  L SSGAFE+
Sbjct: 156 VGAIATIMAGDHIFPRLGMVPPPWYYSLRANRFGTMATIWLFGNFAQSFLQSSGAFEV 213


>01_06_1235 -
           35602548-35602594,35603057-35603060,35603186-35603290,
           35604274-35604589,35605898-35605968,35606076-35606270
          Length = 245

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 31/118 (26%), Positives = 55/118 (46%)
 Frame = +2

Query: 389 GTSVGHTMNIYYCYSCGYKKVFEDYAGIIQQKYPEISVIGANYDPPGFNMYLSRIIGFGK 568
           G + G T+ + +C SC Y+        +++  +P I V+  NY PP     LS+ + F +
Sbjct: 71  GPASGTTVELKFCASCSYRGNAVTVKKMLETSFPGIHVVLENYPPPFPKRALSKAVPFLQ 130

Query: 569 MLVIMCILSGVNIFAWLNKPQPAWWSWCLENKLYACMMMFFLANMIEGQLISSGAFEI 742
           +  +  +++G  IF       P W+     N+      ++   N  +  L SSGAFE+
Sbjct: 131 VGAMATLMAGDQIFPRFGMVPPPWYYSLRANRFGTMATIWLFGNFAQSFLQSSGAFEV 188


>12_01_0499 -
           3959843-3960058,3960158-3960235,3960315-3960389,
           3960590-3960676,3960764-3960831,3961854-3961941,
           3962041-3962141,3962223-3962343,3962647-3962778,
           3962880-3962969
          Length = 351

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +2

Query: 452 FEDYAGIIQQKYPEISVIGANYDPPGFNM---YLSRIIGFGKM 571
           FEDYA    + + ++S +GA +DPP  N    +L+ IIG  KM
Sbjct: 294 FEDYA----EAHAKLSNLGAKFDPPKVNEIKDFLTSIIGMEKM 332


>11_06_0655 -
           25923171-25923185,25923208-25923432,25923865-25924324,
           25924330-25924985
          Length = 451

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 608 FAWLNKPQPAWWSWCLENKLYACMMMFFLANMIEGQLISSGAFEISL 748
           F  +N   P  WSWCL    +  + + F+++ +E   +  G F+ SL
Sbjct: 284 FLIINAIPPRNWSWCLSRAYFGVVGLSFVSSKLE---VLYGCFDRSL 327


>01_01_0548 -
           4033077-4033349,4034007-4034261,4034362-4034533,
           4034616-4034839,4035168-4035332,4035591-4035881,
           4035971-4036303,4036391-4036485,4036570-4036689,
           4036778-4036934,4037176-4037279,4037383-4037543,
           4037636-4037952,4038655-4038936,4039020-4039321,
           4039453-4039543,4040227-4040280,4040367-4040684,
           4041008-4041092,4041178-4041266,4041474-4041594,
           4042136-4042431
          Length = 1434

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 527 GFNMYLSRIIGFGKMLVIMCILSGVNIFAWLNKPQPAWWSW 649
           G NM ++   G   +LV+M IL G   F    +  PAWW W
Sbjct: 678 GRNMIVANTFGSFALLVVM-ILGG---FIITKESIPAWWIW 714


>09_01_0100 + 1523835-1524611
          Length = 258

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 120 NKYRFVFRFVSVHYKIENIRPP-KNKYSVVKRNNHCESNDLHPF 248
           N Y   F+     +K +++ P     Y+ +KR  HCE+ +L PF
Sbjct: 82  NLYLVAFKVQGKWHKFKDLTPKIAPDYASIKRKKHCEAKNL-PF 124


>04_04_1379 +
           33113374-33113529,33114046-33114143,33114811-33114880,
           33116668-33116800,33116981-33118940,33119016-33119076,
           33119554-33120057
          Length = 993

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 577 HHVYTQRCEYFCLVEQTTTCLVELVP*KQAVCMHDDVLFSK 699
           HH+ +   E    +E++  CL E +   QA C+  D + +K
Sbjct: 102 HHLLSLEKEKIARLERSLQCLNEQISFAQAECVEKDAILAK 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,890,951
Number of Sequences: 37544
Number of extensions: 385249
Number of successful extensions: 911
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)