Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1c19
(760 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 211 4e-55
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 210 6e-55
At2g39990.1 68415.m04914 eukaryotic translation initiation facto... 70 1e-12
At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subuni... 48 7e-06
At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subuni... 48 9e-06
At5g23540.1 68418.m02763 26S proteasome regulatory subunit, puta... 44 8e-05
At1g10840.1 68414.m01246 eukaryotic translation initiation facto... 39 0.003
At1g22920.2 68414.m02865 COP9 signalosome subunit 5B / CSN subun... 34 0.12
At1g22920.1 68414.m02864 COP9 signalosome subunit 5B / CSN subun... 34 0.12
At1g71230.1 68414.m08220 COP9 signalosome subunit 5A / CSN subun... 31 0.63
At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger) fa... 31 0.83
At2g47240.1 68415.m05899 long-chain-fatty-acid--CoA ligase famil... 30 1.9
At4g02050.1 68417.m00275 sugar transporter, putative similar to ... 28 7.7
At3g11520.1 68416.m01404 cyclin, putative (CYC2) similar to cycl... 28 7.7
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 211 bits (515), Expect = 4e-55
Identities = 97/177 (54%), Positives = 132/177 (74%), Gaps = 1/177 (0%)
Frame = +1
Query: 229 DHFNRMSKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMY 408
DH+NR++K KRVVGVLLG ++G +DV+NS+AVPF+EDDKD S+WFLDH+Y E+M+
Sbjct: 29 DHYNRVAK-DTSKRVVGVLLGS-SSRGTVDVTNSYAVPFEEDDKDTSIWFLDHNYHESMF 86
Query: 409 GMFKKVNAREKVVGWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQ 588
MFK++NA+E +VGWY TGPKL +ND+ ++ L Y PN VLVIID +PK+LG+PT+AY
Sbjct: 87 HMFKRINAKEHIVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELGIPTKAYY 146
Query: 589 AVEEVHDDGTPTS-RTFEHVPSEIXXXXXXXXXXXHLLRDIKDTTVGSLSQRITNQL 756
AVEEV ++ T S + F HVP+EI HLLRD+KDTT+ +L+ +T +L
Sbjct: 147 AVEEVKENATQKSQQVFVHVPTEIAAHEVEEIGVEHLLRDVKDTTISTLATEVTAKL 203
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 210 bits (514), Expect = 6e-55
Identities = 98/177 (55%), Positives = 133/177 (75%), Gaps = 1/177 (0%)
Frame = +1
Query: 229 DHFNRMSKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMY 408
DH+NR++K + KRVVGVLLG ++GV+DV+NS+AVPF+EDDKD S+WFLDH+Y E+M+
Sbjct: 29 DHYNRVAK-DSSKRVVGVLLGS-SSRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMF 86
Query: 409 GMFKKVNAREKVVGWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQ 588
MFK++NA+E VVGWY TGPKL +ND+ ++ L Y PN VLVIID +PK+LG+PT+AY
Sbjct: 87 HMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELGIPTKAYY 146
Query: 589 AVEEVHDDGTPTS-RTFEHVPSEIXXXXXXXXXXXHLLRDIKDTTVGSLSQRITNQL 756
AVEEV ++ T S + F HV +EI HLLRD+KDTT+ +L+ +T +L
Sbjct: 147 AVEEVKENATQKSQKVFVHVSTEIAAHEVEEIGVEHLLRDVKDTTISTLATEVTAKL 203
>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
SP|O04202 Eukaryotic translation initiation factor 3
subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 293
Score = 70.1 bits (164), Expect = 1e-12
Identities = 35/94 (37%), Positives = 52/94 (55%)
Frame = +1
Query: 265 KRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKV 444
+RV+G LLG G +D+ NS+AVP +E +V D DY NM KVN++E +
Sbjct: 50 ERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV---DIDYHHNMLASHLKVNSKETI 106
Query: 445 VGWYHTGPKLHQNDIAINELIRRYCPNSVLVIID 546
VGWY TG ++ I++ R PN + + +D
Sbjct: 107 VGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVD 140
>At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6A) identical to CSN complex subunit 6A [Arabidopsis
thaliana] GI:18056665, COP9 complex subunit 6
[Arabidopsis thaliana] GI:15809663; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; identical to
cDNA CSN complex subunit 6A (CSN6A) GI:18056664
Length = 317
Score = 48.0 bits (109), Expect = 7e-06
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 9/138 (6%)
Frame = +1
Query: 268 RVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVV 447
RV G ++G R + V ++ NSF + +D S LD +LE ++KKV ++
Sbjct: 57 RVYGCVIGVQRGRTV-EIFNSFELLYDP-----STQTLDRSFLEKKQELYKKVFPDFYIL 110
Query: 448 GWYHTGPKLHQNDIAINELIRRYCPNSVLVIID--AKPKDLGLPTEAYQAVEEVH-DDGT 618
GWY TG ++D+ I++ + + V V+++ LP Y++ E+H DG
Sbjct: 111 GWYSTGSDAEESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYES--ELHVIDGI 168
Query: 619 P------TSRTFEHVPSE 654
P TS T E V +E
Sbjct: 169 PQLIFAHTSYTIETVEAE 186
>At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6B) identical to COP9 signalosome subunit 6
[Arabidopsis thaliana] GI:17940314, CSN complex subunit
6B [Arabidopsis thaliana] GI:18056667; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; supporting cDNA
gi|17940313|gb|AF434762.1|AF434762; identical to cDNA
CSN complex subunit 6B (CSN6B) GI:18056666
Length = 317
Score = 47.6 bits (108), Expect = 9e-06
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 2/165 (1%)
Frame = +1
Query: 268 RVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVV 447
RV G ++G R + V ++ NSF + FD ++ LD +LE ++KKV V+
Sbjct: 57 RVYGCVIGLQRGRTV-EIFNSFELIFDP-----ALDTLDRSFLEKKQELYKKVFPDFYVL 110
Query: 448 GWYHTGPKLHQNDIAINELIRRYCPNSVLVIID--AKPKDLGLPTEAYQAVEEVHDDGTP 621
GWY TG ++D+ I++ + + V V+++ LP Y++ V DG P
Sbjct: 111 GWYSTGSDATESDMHIHKALMDINESPVYVLLNPAINHAQKDLPVTIYESEFHV-IDGIP 169
Query: 622 TSRTFEHVPSEIXXXXXXXXXXXHLLRDIKDTTVGSLSQRITNQL 756
S F H I H+ +K + GS + ++ L
Sbjct: 170 QS-IFVHTSYTIETVEAERISVDHVAH-LKPSDGGSAATQLAAHL 212
>At5g23540.1 68418.m02763 26S proteasome regulatory subunit,
putative similar to 26S proteasome-associated pad1
homolog [Homo sapiens] GI:1923256, 26S proteasome,
non-ATPase subunit [Mus musculus] GI:2505940; contains
Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 308
Score = 44.4 bits (100), Expect = 8e-05
Identities = 25/73 (34%), Positives = 39/73 (53%)
Frame = +1
Query: 250 KIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVN 429
+ G V+G++LG + + + V + FA+P + SV +DH + NM M K+
Sbjct: 45 RAGVPMEVMGLMLGEFVDEYTVRVVDVFAMP--QSGTGVSVEAVDHVFQTNMLDMLKQTG 102
Query: 430 AREKVVGWYHTGP 468
E VVGWYH+ P
Sbjct: 103 RPEMVVGWYHSHP 115
>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
SP|Q9C5Z2 Eukaryotic translation initiation factor 3
subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 337
Score = 39.1 bits (87), Expect = 0.003
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Frame = +1
Query: 271 VVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVG 450
V G LLG VL+V+N F PF D D+ + +Y M ++VN VG
Sbjct: 47 VTGQLLGL-DVGSVLEVTNCF--PFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVG 103
Query: 451 WYHTGPKLHQNDIAINELIRRYCPN---SVLVIIDAKPKDLGL 570
WY + + + E Y N V +I D DLG+
Sbjct: 104 WYQSTVLGSYQTVELIETFMNYQENIKRCVCIIYDPSKADLGV 146
>At1g22920.2 68414.m02865 COP9 signalosome subunit 5B / CSN subunit
5B (CSN5B) / c-JUN coactivator protein AJH1, putative
(AJH1) COP9 complex subunit CSN5-1; identical to
Arabidopsis homologs of a c-Jun coactivator AJH1
GI:3641314 from [Arabidopsis thaliana]; identical to
cDNA CSN complex subunit 5B (CSN5B) GI:18056662;
contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 351
Score = 33.9 bits (74), Expect = 0.12
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Frame = +1
Query: 247 SKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKV 426
++ G ++G++ G ++ V ++FA+P + + + ++Y+ K
Sbjct: 73 ARSGGTIEIMGLMQGKTEGDTII-VMDAFALPVEGTETRVNAQSDAYEYMVEYSQTSKLA 131
Query: 427 NAREKVVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIID 546
E VVGWYH+ P L D++ L ++Y + V+ID
Sbjct: 132 GRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVID 175
>At1g22920.1 68414.m02864 COP9 signalosome subunit 5B / CSN subunit
5B (CSN5B) / c-JUN coactivator protein AJH1, putative
(AJH1) COP9 complex subunit CSN5-1; identical to
Arabidopsis homologs of a c-Jun coactivator AJH1
GI:3641314 from [Arabidopsis thaliana]; identical to
cDNA CSN complex subunit 5B (CSN5B) GI:18056662;
contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 357
Score = 33.9 bits (74), Expect = 0.12
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Frame = +1
Query: 247 SKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKV 426
++ G ++G++ G ++ V ++FA+P + + + ++Y+ K
Sbjct: 73 ARSGGTIEIMGLMQGKTEGDTII-VMDAFALPVEGTETRVNAQSDAYEYMVEYSQTSKLA 131
Query: 427 NAREKVVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIID 546
E VVGWYH+ P L D++ L ++Y + V+ID
Sbjct: 132 GRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVID 175
>At1g71230.1 68414.m08220 COP9 signalosome subunit 5A / CSN subunit
5A (CSN5A) / c-JUN coactivator protein AJH2, putative
(AJH2) COP9 complex subunit CSN5-2; identical to c-Jun
coactivator protein AJH2 GI:3641312 from [Arabidopsis
thaliana]; identical to cDNA CSN complex subunit 5A
(CSN5A) GI:18056660; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 358
Score = 31.5 bits (68), Expect = 0.63
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Frame = +1
Query: 247 SKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKV 426
++ G ++G++ G ++ V ++FA+P + + + ++Y+ Y K+
Sbjct: 73 ARSGGTIEIMGLMQGKTDGDTII-VMDAFALPVEGTETRVNAQDDAYEYMVE-YSQTNKL 130
Query: 427 NAR-EKVVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIID 546
R E VVGWYH+ P L D++ L +++ + V+ID
Sbjct: 131 AGRLENVVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFLAVVID 175
>At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 717
Score = 31.1 bits (67), Expect = 0.83
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 457 HTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQAVEEV 603
H+ L ++ +NEL R NS+L + KP+ L PT A++A E++
Sbjct: 646 HSDDSLRSLEVELNELSRIKPRNSILNRTEDKPEQL-TPTSAWRAAEKL 693
>At2g47240.1 68415.m05899 long-chain-fatty-acid--CoA ligase family
protein / long-chain acyl-CoA synthetase family protein
similar to GI:1617270 (MF7P) and gi:1617628 (MF45P) from
[Brassica napus] ; contains Pfam AMP-binding enzyme
domain PF00501
Length = 660
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 409 GMFKKVNAREKVV--GWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEA 582
G +K E+V+ GW+HTG I E++ PN VL IID K + L
Sbjct: 478 GYYKNPELTEEVMKDGWFHTGD--------IGEIL----PNGVLKIIDRKKNLIKLSQGE 525
Query: 583 YQAVEEVHD 609
Y A+E + +
Sbjct: 526 YVALEHLEN 534
>At4g02050.1 68417.m00275 sugar transporter, putative similar to
SP|Q10710 Sugar carrier protein A {Ricinus communis},
glucose transporter [Saccharum hybrid cultivar H65-7052]
GI:347855; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 513
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -2
Query: 678 FFSLLCTNFTWNMFKGPRSWCTIIVYFLYCLVSFSR*TKIFRFSINNYKH*IW 520
F LLC F + +F W T++ F+Y L+ ++ I ++ KH W
Sbjct: 443 FLGLLCA-FKFGIFLFFAGWVTVMTIFVYFLLPETKGVPIEEMTLLWSKHWFW 494
>At3g11520.1 68416.m01404 cyclin, putative (CYC2) similar to cyclin
[Arabidopsis thaliana] GI:1360646; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain; identical to cDNA cyclin box
(cyc2) partial cds GI:456019
Length = 414
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 310 VLDV-SNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVGWYHTGPKLHQ 480
VLD S + + D D DK +Y+E+MY +K+V K + HT P++ +
Sbjct: 131 VLDARSKAASKTLDIDYVDKENDLAAVEYVEDMYIFYKEVVNESKPQMYMHTQPEIDE 188
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,225,995
Number of Sequences: 28952
Number of extensions: 301929
Number of successful extensions: 761
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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