Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1c17
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   1.1  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    24   6.1  
SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         24   6.1  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    24   6.1  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    23   8.1  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    23   8.1  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    23   8.1  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 115 FDWLFCGIV*KTEILFFFP 59
           + WLFCGI       FFFP
Sbjct: 46  WSWLFCGITGGEVSFFFFP 64


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 110 LVILRHRVEDGNFVLFSIVTFC 45
           LVI+RHR  D +F + + +  C
Sbjct: 135 LVIIRHRASDEHFEIVNEILSC 156


>SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = -1

Query: 130 SPSPLFDWLF--CGIV*KTE---ILFFFP*LHFVYIFIKPR 23
           SPSP   WLF   G++   +   IL+ +P ++  Y+  +P+
Sbjct: 48  SPSPFLRWLFSVLGVLMSMDVFCILYAYPSVYLHYVSEEPK 88


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 208  LDIVIHRRRNLLSQKLTQQKE 270
            L + + RRR LLS+K  ++KE
Sbjct: 1085 LKVEVERRRRLLSEKEERRKE 1105


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 195 CKLYSRYSNTSQEEPVVTK 251
           C LY +    +QE PVV K
Sbjct: 450 CNLYRKLKKATQEVPVVPK 468


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 59  WKKEQNFRLLHDAAK*PIKQRRRRQDTL 142
           W  E+    +HDA   P KQR   ++ L
Sbjct: 434 WNTEELANSIHDALTMPEKQREANENKL 461


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -1

Query: 214 YLEYNLHNSAMT---PAPRTRPPMIVSQGV 134
           +L+ NL N       P+P TRPP+ V  G+
Sbjct: 59  HLDANLSNVPTINSIPSPVTRPPVAVGGGI 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,213,461
Number of Sequences: 5004
Number of extensions: 20881
Number of successful extensions: 51
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)