Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1c16
(798 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132865-10|CAB60607.2| 279|Caenorhabditis elegans Hypothetical... 143 1e-34
AL132865-9|CAB60608.2| 276|Caenorhabditis elegans Hypothetical ... 143 1e-34
AL132865-18|CAJ76950.1| 282|Caenorhabditis elegans Hypothetical... 138 4e-33
AL132865-11|CAC42380.2| 265|Caenorhabditis elegans Hypothetical... 138 4e-33
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 29 5.1
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 5.1
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 5.1
U38377-3|AAA79748.1| 652|Caenorhabditis elegans Cohesin family ... 28 6.7
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 28 6.7
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p... 28 8.9
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei... 28 8.9
AC024805-10|AAK39342.3| 1058|Caenorhabditis elegans Hypothetical... 28 8.9
>AL132865-10|CAB60607.2| 279|Caenorhabditis elegans Hypothetical
protein Y62E10A.13b protein.
Length = 279
Score = 143 bits (347), Expect = 1e-34
Identities = 71/134 (52%), Positives = 90/134 (67%)
Frame = +1
Query: 385 QQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEALK 564
++ V+ ++R AD VCFDVDSTV QDEGIDELA + G G+ V +T AM GN F++AL
Sbjct: 46 EEEVKRVWRKADAVCFDVDSTVCQDEGIDELAAYLGVGEAVANVTRTAMNGNARFRDALA 105
Query: 565 KRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVSGGFRSLIEPVAERL 744
RL +++PN Q+ +F+ +LT GI ELV LH RG VYLVSGGFR LI PVAE L
Sbjct: 106 ARLQVMKPNHEQLEQFVNISKPKLTVGIRELVSRLHARGTHVYLVSGGFRRLILPVAELL 165
Query: 745 NIPTINIFANRLKF 786
I I+AN + F
Sbjct: 166 GIEKSRIYANEILF 179
>AL132865-9|CAB60608.2| 276|Caenorhabditis elegans Hypothetical
protein Y62E10A.13a protein.
Length = 276
Score = 143 bits (347), Expect = 1e-34
Identities = 71/134 (52%), Positives = 90/134 (67%)
Frame = +1
Query: 385 QQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEALK 564
++ V+ ++R AD VCFDVDSTV QDEGIDELA + G G+ V +T AM GN F++AL
Sbjct: 43 EEEVKRVWRKADAVCFDVDSTVCQDEGIDELAAYLGVGEAVANVTRTAMNGNARFRDALA 102
Query: 565 KRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVSGGFRSLIEPVAERL 744
RL +++PN Q+ +F+ +LT GI ELV LH RG VYLVSGGFR LI PVAE L
Sbjct: 103 ARLQVMKPNHEQLEQFVNISKPKLTVGIRELVSRLHARGTHVYLVSGGFRRLILPVAELL 162
Query: 745 NIPTINIFANRLKF 786
I I+AN + F
Sbjct: 163 GIEKSRIYANEILF 176
>AL132865-18|CAJ76950.1| 282|Caenorhabditis elegans Hypothetical
protein Y62E10A.13d protein.
Length = 282
Score = 138 bits (334), Expect = 4e-33
Identities = 71/136 (52%), Positives = 90/136 (66%), Gaps = 2/136 (1%)
Frame = +1
Query: 385 QQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQ--EA 558
++ V+ ++R AD VCFDVDSTV QDEGIDELA + G G+ V +T AM GN F+ +A
Sbjct: 47 EEEVKRVWRKADAVCFDVDSTVCQDEGIDELAAYLGVGEAVANVTRTAMNGNARFRYRDA 106
Query: 559 LKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVSGGFRSLIEPVAE 738
L RL +++PN Q+ +F+ +LT GI ELV LH RG VYLVSGGFR LI PVAE
Sbjct: 107 LAARLQVMKPNHEQLEQFVNISKPKLTVGIRELVSRLHARGTHVYLVSGGFRRLILPVAE 166
Query: 739 RLNIPTINIFANRLKF 786
L I I+AN + F
Sbjct: 167 LLGIEKSRIYANEILF 182
>AL132865-11|CAC42380.2| 265|Caenorhabditis elegans Hypothetical
protein Y62E10A.13c protein.
Length = 265
Score = 138 bits (334), Expect = 4e-33
Identities = 71/136 (52%), Positives = 90/136 (66%), Gaps = 2/136 (1%)
Frame = +1
Query: 385 QQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQ--EA 558
++ V+ ++R AD VCFDVDSTV QDEGIDELA + G G+ V +T AM GN F+ +A
Sbjct: 30 EEEVKRVWRKADAVCFDVDSTVCQDEGIDELAAYLGVGEAVANVTRTAMNGNARFRYRDA 89
Query: 559 LKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVSGGFRSLIEPVAE 738
L RL +++PN Q+ +F+ +LT GI ELV LH RG VYLVSGGFR LI PVAE
Sbjct: 90 LAARLQVMKPNHEQLEQFVNISKPKLTVGIRELVSRLHARGTHVYLVSGGFRRLILPVAE 149
Query: 739 RLNIPTINIFANRLKF 786
L I I+AN + F
Sbjct: 150 LLGIEKSRIYANEILF 165
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 539 LPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV 411
L P S +S LTS P P + SS S+ T Q+ S++
Sbjct: 482 LSPSTSGMSTLTSEPSPSSTQSSGAQSTLTTPSPNPSQSTSSL 524
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 539 LPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV 411
L P S +S LTS P P + SS S+ T Q+ S++
Sbjct: 689 LSPSTSGMSTLTSEPSPSSTQSSGAQSTLTTPSPNPSQSTSSL 731
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 539 LPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV 411
L P S +S LTS P P + SS S+ T Q+ S++
Sbjct: 689 LSPSTSGMSTLTSEPSPSSTQSSGAQSTLTTPSPNPSQSTSSL 731
>U38377-3|AAA79748.1| 652|Caenorhabditis elegans Cohesin family
protein 1 protein.
Length = 652
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 499 DEVKRLTAEAMGGNMTFQEALKKRLDIIRPN 591
D+VK +T E M GNM + RLD+ P+
Sbjct: 385 DDVKMITGEEMKGNMADFSDILTRLDLAPPS 415
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 28.3 bits (60), Expect = 6.7
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Frame = -2
Query: 698 TRYTMTPLSCNSFTNSVIPGVSLTGNFSMNSL--I*PTLGLMMSS-----LFFKASWNVI 540
T T + S S NSV S G+F++ S I T G M SS +A +
Sbjct: 429 TGMTTSQASLRSTQNSV---TSTPGSFTVTSTPTITSTQGAMASSSSNSPTSTQAISSST 485
Query: 539 LPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSWTVCWG 381
+ +AS+ TSS ++ASSS PS TV + S T + V + T +G
Sbjct: 486 VTTVASSTIAPTSSQESSSIASSSAPSQSTTVITVS--TTATVSSGQSTSTFG 536
>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical
protein H05L14.2 protein.
Length = 2162
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 503 SSPFPQNLASSS-MPSSCMTVESTSKQTQSAVLNNS 399
SSP L++SS +PS T +S Q QS V NNS
Sbjct: 831 SSPSSTRLSNSSNIPSCFATPDSPDSQLQSFVSNNS 866
>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
protein H05L14.2 protein.
Length = 2162
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 503 SSPFPQNLASSS-MPSSCMTVESTSKQTQSAVLNNS 399
SSP L++SS +PS T +S Q QS V NNS
Sbjct: 831 SSPSSTRLSNSSNIPSCFATPDSPDSQLQSFVSNNS 866
>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
protein.
Length = 2427
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +1
Query: 436 VDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEALKKRLDIIRPNVGQIRE 609
+D+ + E L K KG+E+ R AEA G ++ +KKR++ + + GQIR+
Sbjct: 1766 IDTELASHEPQVSLVKL--KGEELLRSAAEAGVG----EDQIKKRMEDLEQSWGQIRD 1817
>AC024805-10|AAK39342.3| 1058|Caenorhabditis elegans Hypothetical
protein Y51H7C.11 protein.
Length = 1058
Score = 27.9 bits (59), Expect = 8.9
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Frame = +1
Query: 412 TADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMT--FQEALKKRLDIIR 585
+AD V F VDS V D ++E ++ K L + N+T + E +KK L I
Sbjct: 295 SADDVEF-VDS-VEDDVDVEEYSQLFDVNLVWKNLN---LASNLTKNYMERMKKELTICY 349
Query: 586 PNVGQIRE----FIEKFPV--------RLTPGITELVKELHERGV 684
P +GQ+ FIEK PV RL I++L + L E G+
Sbjct: 350 PLLGQVYAFDPIFIEKLPVFAHYDHVARLHINISQLAEHLVEFGI 394
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,556,008
Number of Sequences: 27780
Number of extensions: 336642
Number of successful extensions: 1133
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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