Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1c11
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1279 + 27510605-27513301                                         31   0.38 
03_05_0060 + 20363857-20365359                                         29   1.6  
01_06_1153 - 34942608-34942975,34943082-34943330,34943516-349436...    28   4.7  
04_04_0748 + 27738155-27740290                                         27   6.3  
02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715     27   8.3  

>12_02_1279 + 27510605-27513301
          Length = 898

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +1

Query: 64  LQTVMSAIRGGCSGCPSPCNSTRNCTPCCSGGS 162
           L TV +A  GGC   P PC S   CTP  +G S
Sbjct: 298 LPTVWAAPTGGCD-LPLPCRSLGLCTPGTNGSS 329


>03_05_0060 + 20363857-20365359
          Length = 500

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 164 RDPPLQH--GVQFLVELQGDGHPLQPPRIADITVCNLLIA 51
           R PPL    GV  L  L   GHPL   R+A + + NL +A
Sbjct: 36  RRPPLDTAVGVTVLQHLMEAGHPLNSTRVARLGLRNLAVA 75


>01_06_1153 -
           34942608-34942975,34943082-34943330,34943516-34943625,
           34944698-34944771,34945237-34945306,34945848-34945947,
           34946045-34946120,34946572-34946646,34947067-34947156,
           34947238-34947354,34947457-34947567,34947649-34947788,
           34947962-34948043,34948224-34948303,34948938-34949046,
           34949295-34949417,34949972-34950044,34950338-34950489,
           34951029-34951127,34952258-34952383
          Length = 807

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 237 SSFVKGSNRTRRLAYS*HSIVNCDQRSSAAARSTISG 127
           +S V   NR+  +AY+  +  + DQ + A+ARS++ G
Sbjct: 597 TSSVTSDNRSSTVAYAPSTSSSLDQTAPASARSSVDG 633


>04_04_0748 + 27738155-27740290
          Length = 711

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +1

Query: 97  CSGCPSPCNSTRNCTPCCSGGSLVTVYNAVLAIGQPPRPIAAFDKATIAIGHHG 258
           C G PSP NST   +     G+  ++   V A+ +     AA      A G HG
Sbjct: 50  CRGSPSPPNSTSTLSSSHGSGAADSISTGVAAVSE-SSAAAAEATRWAAPGEHG 102


>02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715
          Length = 1536

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 23   INLKCVIAWMLLINYKLLCPQFEAVAADAHRPVTPPEIVLRAAAEDLW 166
            INL C+  ++  ++  L  P    VAA A  P  PPE +LR   E  W
Sbjct: 1088 INLPCLSPFISPMSSGLPAPI--KVAATAKGPFVPPENLLRFQPETGW 1133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,116,707
Number of Sequences: 37544
Number of extensions: 266631
Number of successful extensions: 896
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)