Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1c08
(781 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 120 2e-28
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 89 5e-19
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 36 0.005
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 36 0.007
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 35 0.015
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 33 0.061
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 33 0.061
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 31 0.24
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 31 0.24
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 30 0.32
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 29 0.75
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 28 1.7
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit... 28 1.7
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 27 2.3
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 27 3.0
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 27 4.0
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe... 27 4.0
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar... 26 5.3
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 26 5.3
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 7.0
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 25 9.2
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 120 bits (290), Expect = 2e-28
Identities = 68/145 (46%), Positives = 83/145 (57%), Gaps = 11/145 (7%)
Frame = +2
Query: 380 WSCYGLGELKLLSYKPEGTHLCRKIHHMYHCKEDDWGFAHFIAWDDLMNPDNGF----VK 547
+SC L L + + HH + + DWGF F+ + P F ++
Sbjct: 135 YSCCAQFALSLSNVQDPTVMQINTSHHRFRSEVKDWGFTRFVDLRKIAVPTPEFPVPFLE 194
Query: 548 NDSITLEAHV-IAEAPHGVSW------DSKKHTGYVGLKNQGATCYMNSLLQTLFFTNVL 706
ND I + V + + P GV W +SKK TGYVGLKNQGATCYMNSLLQ+LFFTN+
Sbjct: 195 NDEICISVTVRVLQDPTGVLWHSFVNYNSKKETGYVGLKNQGATCYMNSLLQSLFFTNIF 254
Query: 707 RKAVYKIPTVGDDSSRSVAXALQRV 781
RK VYKIPT DDS SVA ALQRV
Sbjct: 255 RKTVYKIPTDNDDSRDSVAYALQRV 279
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 89.4 bits (212), Expect = 5e-19
Identities = 67/205 (32%), Positives = 99/205 (48%), Gaps = 11/205 (5%)
Frame = +2
Query: 197 FRFIVQNVSELKEQVLSPACYVRCLPWKILVLVRNTTRNDHQPHKALGVFLQCNGECSSP 376
F + +++ EL + +SP V +KI + T ++ L ++ E S
Sbjct: 58 FTWHIKSWHELDRRAVSPQFAVGSRQFKITYFPQGTLQSAGFTSIFLE-YIPSEEEKLSN 116
Query: 377 GWSCYGLGELKLLSYKPEGTHLCRKIHHMYHCKEDDWGFAHFIAWDDLM---NPD-NGFV 544
+ C + + + + H + + DWGF F L+ PD V
Sbjct: 117 KYGCCCQFAFVISNPRKPSLSVANSAHCRFSPEIVDWGFTQFAELKKLLCRQAPDVPPIV 176
Query: 545 KNDSITLEAHV-IAEAPHGVSW------DSKKHTGYVGLKNQGATCYMNSLLQTLFFTNV 703
++ ++ L A+V I + P GV W DSK TGYVGLKNQGATCYMNSLLQ+L+ +
Sbjct: 177 EDGALLLTAYVRILKDPTGVLWHSFNDYDSKIATGYVGLKNQGATCYMNSLLQSLYIIHA 236
Query: 704 LRKAVYKIPTVGDDSSRSVAXALQR 778
R+ VY+IPT S+A ALQR
Sbjct: 237 FRRIVYQIPTDSPQGKDSIAYALQR 261
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/32 (56%), Positives = 19/32 (59%)
Frame = +2
Query: 614 KKHTGYVGLKNQGATCYMNSLLQTLFFTNVLR 709
K+ G GL N G TCYMNS LQ L T LR
Sbjct: 305 KRVPGTCGLSNLGNTCYMNSALQCLTHTRELR 336
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 632 VGLKNQGATCYMNSLLQTLFFTNVLRKAVYKI 727
+GL+N G CY+NSL+Q F LR A+ I
Sbjct: 614 IGLENTGNLCYLNSLIQYYFIIKPLRNAILDI 645
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 34.7 bits (76), Expect = 0.015
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 617 KHTGYVGLKNQGATCYMNSLLQTLFFTNVLRK 712
K G GL N G +CYMNS LQ + T+ L K
Sbjct: 274 KEIGLCGLYNLGNSCYMNSALQCMIHTHELTK 305
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 32.7 bits (71), Expect = 0.061
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 554 SITLEAHVIAEAPHGVSWDSKKHTGY--VGLKNQGATCYMNSLLQTLF 691
S+ L+ H + A S + Y +GL N G TCYMN +LQ LF
Sbjct: 44 SLKLDPHFMELANPKKVDSSLSYENYQPIGLTNLGNTCYMNCVLQCLF 91
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 32.7 bits (71), Expect = 0.061
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 584 EAPHGVSWDSKKHTGYV-GLKNQGATCYMNSLLQTLFFTNVLRKAV 718
++ H SKK+ GLKN GATC+ NS LQ L L +
Sbjct: 191 KSKHSSGKSSKKYKVISPGLKNLGATCFFNSTLQVLCACEALHDVI 236
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 30.7 bits (66), Expect = 0.24
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 587 APHGVSWDSKKHTGYV-GLKNQGATCYMNSLLQTLFFTNVLRKAVYKIPTVG 739
A V + + GY GL N G TCYMNS +Q L L AV + + G
Sbjct: 84 AVESVEQEESEDDGYPSGLINLGNTCYMNSTVQMLRAIPELSDAVSQFNSSG 135
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 30.7 bits (66), Expect = 0.24
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 626 GYVGLKNQGATCYMNSLLQTLF 691
G GLKN G +CY+ S +Q+LF
Sbjct: 298 GLTGLKNLGNSCYLASTMQSLF 319
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 30.3 bits (65), Expect = 0.32
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 626 GYVGLKNQGATCYMNSLLQTLFFTNVLRKAVY 721
G G++N GATC+M+ +LQ++ ++R +
Sbjct: 143 GLRGIQNLGATCFMSVILQSILHNPLVRNLFF 174
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 29.1 bits (62), Expect = 0.75
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 533 NGFVKNDSITLE-AHVI-AEAPHGVSWDSKKHTGYVGLKNQGATCYMNSLLQTL 688
N FV D + A ++ E + WD+ GL N G TC+MNS+LQ +
Sbjct: 91 NDFVDEDPAFIPPARILFPEEKLSMEWDNIMPNA-PGLVNLGNTCFMNSVLQLM 143
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +2
Query: 425 PEGTHLCR-KIHHMYHCKED--DWGFAHFIAWDDLMNPDN 535
P+G HL ++H Y E DW + HF++ L++ DN
Sbjct: 557 PDGDHLTLLNVYHAYKSGEGTADWCWNHFLSHRALISADN 596
>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 161
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 92 AEMIEASSVDNATAPLPINHDFTPQDEDMARSE 190
A MI S ++ I +DFTP++E+ R E
Sbjct: 122 ANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKE 154
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 509 WDDLMNPDNGFVKNDSITLE 568
W D+++PD FVK S+ E
Sbjct: 93 WSDILDPDADFVKQSSLAFE 112
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +2
Query: 635 GLKNQGATCYMNSLLQTLF----FTNVLRKAVYKIP 730
G N G C+MNS+LQ L F N+L++ +P
Sbjct: 134 GFINTGNICFMNSILQALMYCVPFYNLLKQINRMVP 169
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 187 GGHFPFYSSKCQRVERASAIP 249
GG FP+ S+CQ + S IP
Sbjct: 127 GGKFPYVFSECQAIHARSFIP 147
>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -2
Query: 183 RAISSSCGVKS*LMGRGAVALSTLLASIISAANLISYFNLL 61
+ I S V L G + L+T S+I+A LISYFNLL
Sbjct: 192 KLIDSKDFVLGFLAGLSVLLLNT--GSLITAKPLISYFNLL 230
>SPAC6G9.03c |mug183||histone chaperone
Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -1
Query: 211 NYKTESGLRTGHIFVLRCEVMING*RSRCIIDAACFNHLSSESYILLQFTVHY 53
NYK + G H+F LR ++ + I+ A H S + + FTV++
Sbjct: 206 NYKAKDG----HLFFLRTGILWGFRKPILFIELASIQHFSYSNVLQRTFTVNF 254
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = -3
Query: 482 RLLCNGTCDEFSCISAYPQAYRIGVLVRPIHNKTTQANCIR---RCTEGIRLKLCVVGDR 312
++L + ++ SCI + IG L I ++ IR C +GI ++ + D+
Sbjct: 34 KILHDSVGNKISCIGKSTKRIAIGTLDGRIVILNSRLQLIRDFYACEQGIVQQIYITADQ 93
Query: 311 FS*CCV 294
+ CCV
Sbjct: 94 SALCCV 99
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 587 APHGVSWDSKKHTGYVGLKNQGATCYMNSLLQTLFFTNVLRKAVYKIPTVGDD 745
+P S++ KKH + K+ S T F + + A+ IPTV DD
Sbjct: 23 SPQKSSFEEKKHNFSITNKSLETLRSQESPCSTTFPVSDRKDALLNIPTVVDD 75
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 89 AAEMIEASSVDNATAPLPINHDFTPQDEDMARSEATFRFIVQN 217
A + + ASS+DN++ P D E++AR+ + + + QN
Sbjct: 133 AIDALRASSIDNSSDPAKFRSDL----ENIARTTLSSKILSQN 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,363,469
Number of Sequences: 5004
Number of extensions: 74984
Number of successful extensions: 213
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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