Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1c08
         (781 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical prote...    24   6.1  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   8.0  
AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein ...    23   8.0  

>AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical protein
           protein.
          Length = 166

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 116 VDNATAPLPINHDFTPQD 169
           VD+A  PLP N D  P+D
Sbjct: 47  VDDAEQPLPPNGDELPED 64


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 608 DSKKHTGYVGLKNQGATCYMNSLLQTLFFTNVLRKA 715
           DSK  TG + LK  GAT ++ S   +LF  ++ + A
Sbjct: 519 DSKTGTGNLLLKTAGATGHL-SCCNSLFLNDLQQAA 553


>AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein
           protein.
          Length = 705

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 110 LLQSSQQRILYLTSIYCSLFMVL 42
           L +SSQ + L+L  ++ SLF VL
Sbjct: 511 LWRSSQTQTLFLVLVFVSLFGVL 533


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 848,011
Number of Sequences: 2352
Number of extensions: 18114
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81497388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)