Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1c08
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.79 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.79 
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   2.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   7.4  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   7.4  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    22   7.4  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   7.4  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 440 LCRKIHHMYHCKE 478
           LC  +HH +HC E
Sbjct: 466 LCNTLHHWHHCPE 478


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 665 MNSLLQTLFFTNVLRKAVYKIPTVGD 742
           M + + +LF T   R  VYK+ T+GD
Sbjct: 448 MLNAMYSLFDTLTERNRVYKVETIGD 473


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 694 HERIT*GGVQDPDSRRRQFSVGR 762
           H+R   GG + P  ++R+F +GR
Sbjct: 9   HKRRATGGKRKPIRKKRKFELGR 31


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 580 YNMSLQCNRIILNKTVIGIHQVIP 509
           YN    CNR+   K  I  H+ IP
Sbjct: 245 YNCERLCNRLGRVKRFINWHEPIP 268


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 554 SITLEAHVIAEAPHGVSWDSKKHTGYVGLKNQGATCYMNS 673
           SITL   VIAE    V +D +  TG+  ++ +  +  +NS
Sbjct: 12  SITL---VIAEESDNVLFDKRAPTGHQEMQGKQNSASLNS 48


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 554 SITLEAHVIAEAPHGVSWDSKKHTGYVGLKNQGATCYMNS 673
           SITL   VIAE    V +D +  TG+  ++ +  +  +NS
Sbjct: 12  SITL---VIAEESDNVLFDKRAPTGHQEMQGKQNSASLNS 48


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 554 SITLEAHVIAEAPHGVSWDSKKHTGYVGLKNQGATCYMNS 673
           SITL   VIAE    V +D +  TG+  ++ +  +  +NS
Sbjct: 12  SITL---VIAEESDNVLFDKRAPTGHQEMQGKQNSASLNS 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,036
Number of Sequences: 438
Number of extensions: 5523
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)