Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1c07
(444 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 1.3
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 26 3.0
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 25 4.0
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 25 5.2
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 5.2
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 5.2
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 25 5.2
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 25 5.2
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 25 6.9
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc... 24 9.1
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ... 24 9.1
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 27.1 bits (57), Expect = 1.3
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 151 TIQRPDVNTIRFIDCYIGRVNGFALGSIEIFKKMKRKGVIKPVGPSDMYRIPIT 312
T++R + TIR I +N L + F+K G+ K V S+ YR+ T
Sbjct: 646 TLRRNRLATIRNARKSISTLNDRELLPVNFFEKKVNSGLYKSVERSENYRLGAT 699
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 25.8 bits (54), Expect = 3.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 297 VHIRRANWFNHTFPFHFFKYLNRS*CKSIHSPNVAVN 187
++IR N + TFP + +LN+S K+ N+++N
Sbjct: 69 LNIRIENLHSETFPSDYTSFLNQSPKKNDFDDNMSLN 105
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 4.0
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 115 MKIIEQKSLLPKTIQRPDVNTI 180
+ ++ Q LPK ++RPD+N +
Sbjct: 214 LTVLTQNPNLPKLLERPDINDL 235
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.0 bits (52), Expect = 5.2
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 389 YLFSNLYHEAFVTSASCIHHPYSIEVVMGILYISEGPTGLITPF 258
Y F+ + ++AS + I V+G LY SEG GL F
Sbjct: 261 YFFAKDENSKSKSAASLVKPKIGIRHVLGGLYKSEGLLGLFRGF 304
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 5.2
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +1
Query: 97 QDCVNLMKIIEQKSLLPKTIQRPDVNTIRFIDCYIGRVNGFALGSIEIFKKMKRKGVIKP 276
+DC +++ ++K K ++RP ++ +R R+N K +GV+K
Sbjct: 107 KDCSSVLLSDQEKRQFLKDLRRPGIDNLRRSQ-ICKRINDHCKKMRRCSKCDAMQGVVKK 165
Query: 277 VGP 285
GP
Sbjct: 166 AGP 168
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 25.0 bits (52), Expect = 5.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 278 TGLITPFLFIFLNISIDPNANPFT 207
T + PF+ +FL I D N +P +
Sbjct: 455 TSFLVPFMTVFLKILRDENGSPLS 478
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 25.0 bits (52), Expect = 5.2
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +1
Query: 52 IKECLREIYKEPMTKQDC 105
I++ +RE K+P+T+Q+C
Sbjct: 28 IEQVIRETSKDPVTQQEC 45
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 25.0 bits (52), Expect = 5.2
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -3
Query: 112 NLHNLVLSLAPYIFPVSTLLYNF 44
NL LV++++PY +PV+ +N+
Sbjct: 523 NLFALVVNVSPYTYPVTGPSFNY 545
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 24.6 bits (51), Expect = 6.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 136 IFVQLFSLNLHNLVLSLAPYIFPVSTLLYNFE 41
+F+Q SL NL++SL P I Y++E
Sbjct: 434 LFLQKSSLTEDNLIVSLVPKILAYLLDAYSYE 465
>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 555
Score = 24.2 bits (50), Expect = 9.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 375 FIPRSIRHFCILHPPPILYRSSYGYSVHIRRANWFNHTFPFHFF 244
F P+S+ F +L PP SSY + + + N T P FF
Sbjct: 416 FWPKSLTQFAVLSQPP----SSYVWMFALLVRDVSNVTLPVIFF 455
>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 24.2 bits (50), Expect = 9.1
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 291 YVQNTHNYFYRVWVVDARCRSDECFVV*IRKKIPTTSFTE 410
+ T N Y +W+V C ++ FV+ +RK+I T+F +
Sbjct: 157 FASQTLNSGY-LWMV-LNCLTNAAFVLAMRKRIKLTNFRD 194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,038,052
Number of Sequences: 5004
Number of extensions: 44053
Number of successful extensions: 116
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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