Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1c07
(444 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0117 + 12767502-12767588,12768846-12768908,12769299-12770741 33 0.14
08_02_0078 + 12001523-12001634,12002169-12002500,12002624-120027... 30 0.96
12_01_0911 + 8868557-8868664,8869415-8869420,8869774-8869928,887... 28 2.9
10_08_1039 - 22488405-22489088,22490827-22490927,22491038-22491224 28 2.9
11_05_0015 + 18403367-18403729,18404500-18404565,18405121-184052... 27 6.8
08_02_0925 - 22668875-22668889,22668942-22669018,22669383-226695... 27 6.8
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801... 27 6.8
05_05_0194 + 23139587-23140249 27 9.0
05_01_0368 + 2892476-2893465 27 9.0
>08_02_0117 + 12767502-12767588,12768846-12768908,12769299-12770741
Length = 530
Score = 32.7 bits (71), Expect = 0.14
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Frame = +1
Query: 82 EPMTKQDCVNLMKIIEQKSLLPKTIQRPDVNTIRFIDCYIGRVNGFALGSIEIFKKMKRK 261
EP T ++ K++EQ S+ + IQ PD I F+D G + ++ F K K
Sbjct: 179 EPSTSASSID-EKVLEQPSVEDEEIQTPDCAAILFMD---GFDEDYG-NTLNYFSKRKPL 233
Query: 262 GVIKPVGPSDM----YRIPITTSIEYGWWMQDAEVTN 360
+ P P ++ + + TSI W+++AE+++
Sbjct: 234 VPLPPPDPMELGFLRETVWVLTSIMSDEWLREAELSS 270
>08_02_0078 +
12001523-12001634,12002169-12002500,12002624-12002791,
12002904-12003311
Length = 339
Score = 29.9 bits (64), Expect = 0.96
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Frame = +1
Query: 82 EPMTKQDCVNLMKIIEQKSLLPKTIQRPDVNTIRFIDCYIGRVNGFALGSIEIFKKMKRK 261
EP T ++ K+ EQ S+ + IQ PD I DC+ ++ F K K
Sbjct: 56 EPSTYASSID-EKVPEQPSVENEEIQTPDCAAILLRDCFDEDYG----NTLNYFSKRKPP 110
Query: 262 GVIKPVGPSDMYRIPIT----TSIEYGWWMQDAEVTN 360
+ P P ++ + T TSI W+++AE+++
Sbjct: 111 IPLSPPDPMELGLLRETVRELTSIMSDEWLREAELSS 147
>12_01_0911 +
8868557-8868664,8869415-8869420,8869774-8869928,
8870145-8871031,8871079-8871123,8872528-8872572,
8873025-8873513,8873603-8873733
Length = 621
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +1
Query: 274 PVGPSDMYRIPITTSIEYG--WWMQDAEVTNASWYKLEKRYPQPASP 408
PVGPSD Y S + G WW A+ Y P+ A+P
Sbjct: 111 PVGPSDNYTYRFNVSDQEGTLWWHAHISFLRATVYGAIVLNPRAAAP 157
>10_08_1039 - 22488405-22489088,22490827-22490927,22491038-22491224
Length = 323
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 398 GCGYLFSNLYHEAFVTSASCIHHPYSIEVVMGILYISEG 282
G G++ + YH F +++ + H Y+ VV+ Y+S G
Sbjct: 63 GSGFVSKSAYHHGFFSASIKLPHDYTAGVVVA-FYLSNG 100
>11_05_0015 +
18403367-18403729,18404500-18404565,18405121-18405234,
18406109-18406297,18406335-18406667,18406708-18406743,
18407806-18407919,18408506-18408999,18409293-18409716
Length = 710
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 172 NTIRFIDCYIGRVNGFALGSIEIFKKMKR 258
N + +CY RV G LGS+++ +++R
Sbjct: 287 NGVTKAECYRHRVMGLPLGSLDVVSRIRR 315
>08_02_0925 -
22668875-22668889,22668942-22669018,22669383-22669500,
22669662-22669685,22670067-22670360,22670456-22670563,
22671098-22671946
Length = 494
Score = 27.1 bits (57), Expect = 6.8
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 289 DMYRIPITTSIEYGWWMQD 345
++ R+ IT+ I+YGW +QD
Sbjct: 227 NLERLTITSDIDYGWQIQD 245
>01_07_0054 -
40779336-40779599,40779734-40779848,40779998-40780181,
40780322-40780393,40780485-40780611,40780830-40781011,
40781099-40781249
Length = 364
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = -2
Query: 434 RTLSSINVFGEAGCGYLFSNLYHEAFVTSASCIHHPYSIEVVMGILYIS 288
R S++N+ G G ++ L + + + H P S E + + Y+S
Sbjct: 68 RNFSNVNLIGHGMFGEVYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLS 116
>05_05_0194 + 23139587-23140249
Length = 220
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 362 AFVTSASCIHHPYSIEVVMGIL 297
AF AS + HP+S+ V++G+L
Sbjct: 99 AFALGASLLAHPFSLLVLLGLL 120
>05_01_0368 + 2892476-2893465
Length = 329
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 213 IHSPNVAVNESNSINIRSLDRF 148
IHSP ++SN I RSL+ F
Sbjct: 135 IHSPGKGTSDSNRIPFRSLENF 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,102,799
Number of Sequences: 37544
Number of extensions: 242936
Number of successful extensions: 607
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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