Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1c07
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   2.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   2.6  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   4.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   6.1  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 433 ELYLVLMCSVKLVVGIF 383
           EL++ ++C V  ++G+F
Sbjct: 416 ELFIAIVCFVSYLIGLF 432


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 433 ELYLVLMCSVKLVVGIF 383
           EL++ ++C V  ++G+F
Sbjct: 469 ELFIAIVCFVSYLIGLF 485


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 49  YIKECLREIYKEPMT 93
           Y+ ECL  I K P T
Sbjct: 483 YMNECLLNIQKSPRT 497


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 103 NLVLSLAPYIFPVSTLLYN 47
           N++   +  IFPVS +L+N
Sbjct: 462 NIIDKYSRIIFPVSFMLFN 480


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,693
Number of Sequences: 438
Number of extensions: 3340
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)