Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1c06
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    30   0.28 
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    28   1.5  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   2.6  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   7.9  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    25   7.9  

>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 131 TDCVPYGTPRKIKDPKLCGHKDKGLVLGVYYNENAK 238
           T C   G  R IK+   C HK KG V+ + Y+E  K
Sbjct: 274 TSCKIPGVKRIIKEMSNCVHKQKGNVIWLNYDEPTK 309


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 417 VKHSDPRPDTATNANVGSKSKNILDSPNFGMGDNFNIFQSLPPDSLSYFC 268
           +K S PR    TN  +   + N+LD+ +F + D  +   ++    L YFC
Sbjct: 660 IKISQPRNSLQTNGYIEGMANNVLDA-SFNVEDESH---AISDSELGYFC 705


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 326 IPKLGESRIFFDLDPTFAFVAVSGLGSECLTYNVS 430
           + KLGE    F L P F+ + + G    CL Y ++
Sbjct: 868 LTKLGEQMSLFPLSPRFSKMLIIGQQHGCLPYVIA 902


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 357 KNILDSPNFGMGDNFNIFQSLPPDSLS 277
           + I+ SP+  +GD++NI    PP S++
Sbjct: 385 ETIIKSPSSFIGDSYNIANIDPPSSMN 411


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -1

Query: 698 FELQPSFDLYANHLYHNRREDKFGI*GEFSFPTYFY 591
           F L P+F LY   ++H RR     I       T FY
Sbjct: 567 FRLLPNFTLYPQFIFHLRRSPFLHIFNNSPDETSFY 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,064
Number of Sequences: 5004
Number of extensions: 67801
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)