Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1c03
         (267 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    24   3.1  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    23   5.5  
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    23   7.2  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    23   9.6  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    23   9.6  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    23   9.6  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    23   9.6  

>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 210 FCFLYSSFVCKTWDKTKLVLLISLIYFVLCFNCCSINLK 94
           +C+ Y    C   +KT L LL +LI   L F+   +  K
Sbjct: 377 YCYDYLFMHCNNGEKTSLHLLRTLICMKLDFSNAQLAAK 415


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 245 LNALLLESNSDNFVSCTLHSCAKH 174
           L A L   N D FVS  LH C  H
Sbjct: 276 LIATLAAYNPDEFVSNYLHVCMLH 299


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 242 NALLLESNSDNFVSCTLHSCAKHGTKR 162
           N LLL   + N  +  L+SCAK G  R
Sbjct: 124 NELLLNKETLNNEALKLYSCAKAGICR 150


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 195 SSFVC--KTWDKTKLVLLISLIYFVLCFNCCSINLKTTCFL 79
           SSFV   K W   KL++  +L +F+L      INL  +  L
Sbjct: 343 SSFVSYFKEWRHAKLLIGSALSWFLLDIAFYGINLNQSVIL 383


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 182 HTNEEYRKQNYHCY 223
           HTNEEYR +    Y
Sbjct: 57  HTNEEYRSKGNQSY 70


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 8/35 (22%), Positives = 21/35 (60%)
 Frame = +2

Query: 110 QQLKHKTK*IREIRRTNFVLSHVLHTNEEYRKQNY 214
           ++++H+T  +R+  +     +  +  NE+ RK+N+
Sbjct: 693 ERIEHQTLLLRQREKVPEQFAAEIEKNEDIRKENF 727


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 98  RLILQQLKHKTK*IREIRRTNFVLSHVLHTNEEYRKQ 208
           +LI+++L      + + +  N+V+ H+L T  E  K+
Sbjct: 571 KLIIEELLPHILKLTQDQYGNYVVQHILRTGSESDKK 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 870,656
Number of Sequences: 5004
Number of extensions: 12034
Number of successful extensions: 32
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)