Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1c03
         (267 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0117 + 864966-865686,866860-866883,867006-868063                 25   6.3  
01_01_0113 + 842543-843191,844964-844987,845202-846274                 25   6.3  
06_03_0416 + 20568087-20568702,20568767-20570313                       25   8.3  
03_02_0191 - 6270591-6271364,6271458-6272168                           25   8.3  

>01_01_0117 + 864966-865686,866860-866883,867006-868063
          Length = 600

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 221 NSDNFVSCTLHSCAKHG 171
           + D F +C+ H C+KHG
Sbjct: 29  DEDFFKTCSSHRCSKHG 45


>01_01_0113 + 842543-843191,844964-844987,845202-846274
          Length = 581

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 221 NSDNFVSCTLHSCAKHG 171
           + D F +C+ H C+KHG
Sbjct: 28  DEDFFKTCSSHRCSKHG 44


>06_03_0416 + 20568087-20568702,20568767-20570313
          Length = 720

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 207 CFLYSSFVCKTWDKTKLVLLISLIYFVLCFN 115
           CFL SS  C +  KT+ + + ++ +F   +N
Sbjct: 316 CFLTSSLTCGSARKTRFLAVPNVTHFNFVYN 346


>03_02_0191 - 6270591-6271364,6271458-6272168
          Length = 494

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 140 REIRRTNFVLSHVLHTNEEYRKQNYHCYF 226
           RE RR  + L HV+ T++    + Y C +
Sbjct: 285 REARRAKYRLMHVVRTHKGADDRAYRCVY 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,770,818
Number of Sequences: 37544
Number of extensions: 58254
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)