Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1c03
         (267 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42437-4|AAA83498.2|  349|Caenorhabditis elegans Hypothetical pr...    28   1.0  
Z48783-6|CAA88700.1|  371|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AF025463-4|AAB71010.2|  344|Caenorhabditis elegans Serpentine re...    26   4.2  
Z81527-5|CAB04273.2|  350|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical pr...    25   7.4  

>U42437-4|AAA83498.2|  349|Caenorhabditis elegans Hypothetical
           protein F30B5.7 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 223 VTVII-LFPVLFIRVQNMGQNEISSPYFSNLFCF 125
           VT  I + P+  +RV    QNE    Y S L CF
Sbjct: 18  VTAAIGIVPLFIVRVMKRSQNESEQGYLSYLTCF 51


>Z48783-6|CAA88700.1|  371|Caenorhabditis elegans Hypothetical
           protein F33H1.5 protein.
          Length = 371

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 207 CFLYSSFVCKTWDKTKLVLLISLIY 133
           CF    FVC     ++ +LLIS IY
Sbjct: 109 CFFCHCFVCHAMAHSQWILLISFIY 133


>AF025463-4|AAB71010.2|  344|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 3 protein.
          Length = 344

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -1

Query: 210 FCFLYSSFVCKTWDKTKLVLLISLIYFVLCFNCCS---INLKTTCFLSY 73
           FC+    FVC     ++ +L+IS +Y     +  S   + +   C L+Y
Sbjct: 99  FCYFLHVFVCHCLAHSQWILMISFLYRYYILDQISPDTVKIVRICILTY 147


>Z81527-5|CAB04273.2|  350|Caenorhabditis elegans Hypothetical
           protein F35E12.6 protein.
          Length = 350

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -1

Query: 135 YF-VLCFNCCSINLKTTCFLS-YK 70
           YF V+C  C SIN+KT  F S YK
Sbjct: 268 YFTVICDGCSSINIKTLIFDSKYK 291


>Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical
           protein ZK1010.8 protein.
          Length = 388

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 138 IYFVLCFNCCSINLKTTCFLSYK*FKYLSV 49
           +  ++C     +NL T+  L Y  FKYL V
Sbjct: 83  VIIIVCVIFAILNLLTSVLLLYAAFKYLKV 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,759,120
Number of Sequences: 27780
Number of extensions: 69163
Number of successful extensions: 184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)