Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1b23
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 27 2.1
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 27 2.8
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 27 2.8
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 26 6.6
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 26 6.6
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 8.7
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 25 8.7
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 8.7
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 8.7
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 8.7
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 8.7
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 8.7
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 8.7
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 8.7
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 8.7
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 8.7
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 8.7
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 8.7
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -3
Query: 242 PSEFLSVNKFNLISLISLLSKGAGVPVIFFKIFLVSQMHFFFFVF 108
PS LS N F+ +SL + L + V+FF + + +H F+F+F
Sbjct: 391 PSTILS-NAFSKVSLPNSLI----LRVLFFSLLFIIGIHIFYFLF 430
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 145 NILKKITGTPAPLDKREINEIRLNLFTERNSDGTGSLVLRG 267
NI +K GT ++R+I R NLF T +L+LRG
Sbjct: 341 NIEEKHLGTCDTFEERQIGGDRFNLFEGCPKAKTCTLILRG 381
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 27.1 bits (57), Expect = 2.8
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 181 LDKREINEIRLNLFTERNSDGTG--SLVLRGNDIFQRYNRRITDFDICAICRYIRELKLR 354
++ + I+E + N + TG LVL GN N+ I + ++ + +R LK R
Sbjct: 979 MNSQNISESSITSILLSNCEPTGFDRLVLLGNQYLTSGNQDINNTSNGSLFKRLRYLKSR 1038
Query: 355 VTKIDLCYN 381
+ ++ YN
Sbjct: 1039 IIDLNTQYN 1047
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -3
Query: 233 FLSVNKFNLISLISLLSKGAGVPVIFFKIFLVSQMHFFFFVFGIILLSKFALNKL 69
F++ N L L+ + + F +IF+V F F++ G+I+ S F LN L
Sbjct: 179 FINPNALLLFFPSYLILRKCNSSIKFRQIFVV----FLFYLAGLIITSGFFLNSL 229
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 25.8 bits (54), Expect = 6.6
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -1
Query: 610 SLYCFQGNPRNIHRLSSQYHF 548
S++C +P+ +HR+ +Y F
Sbjct: 445 SIFCLSSDPKQVHRILWRYDF 465
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 614 SKLVLFSRKSAKYSPPFVPISFPFNL 537
SK L ++K +YSP +PI+F N+
Sbjct: 400 SKWELVTQKYQEYSPVMLPIAFIINI 425
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = +1
Query: 496 HLSKYAQFIKLKYLRLNGNDIGTKGGEYF 582
++ YA+F K+++ +G+DIG G +++
Sbjct: 71 NVDDYARFSKMRHSAEHGDDIGAFGWKHY 99
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 490 VLHLSKYAQFIKLKYLRLNGNDIGT 564
V HL KY +L Y ++ +DIGT
Sbjct: 1251 VSHLEKYRHNSELNYATIDESDIGT 1275
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 490 VLHLSKYAQFIKLKYLRLNGNDIGT 564
V HL KY +L Y ++ +DIGT
Sbjct: 1251 VSHLEKYRHNSELNYATIDESDIGT 1275
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 490 VLHLSKYAQFIKLKYLRLNGNDIGT 564
V HL KY +L Y ++ +DIGT
Sbjct: 1251 VSHLEKYRHNSELNYATIDESDIGT 1275
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 490 VLHLSKYAQFIKLKYLRLNGNDIGT 564
V HL KY +L Y ++ +DIGT
Sbjct: 1251 VSHLEKYRHNSELNYATIDESDIGT 1275
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 490 VLHLSKYAQFIKLKYLRLNGNDIGT 564
V HL KY +L Y ++ +DIGT
Sbjct: 1251 VSHLEKYRHNSELNYATIDESDIGT 1275
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 490 VLHLSKYAQFIKLKYLRLNGNDIGT 564
V HL KY +L Y ++ +DIGT
Sbjct: 1251 VSHLEKYRHNSELNYATIDESDIGT 1275
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 490 VLHLSKYAQFIKLKYLRLNGNDIGT 564
V HL KY +L Y ++ +DIGT
Sbjct: 1251 VSHLEKYRHNSELNYATIDESDIGT 1275
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 490 VLHLSKYAQFIKLKYLRLNGNDIGT 564
V HL KY +L Y ++ +DIGT
Sbjct: 1251 VSHLEKYRHNSELNYATIDESDIGT 1275
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 490 VLHLSKYAQFIKLKYLRLNGNDIGT 564
V HL KY +L Y ++ +DIGT
Sbjct: 1251 VSHLEKYRHNSELNYATIDESDIGT 1275
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 490 VLHLSKYAQFIKLKYLRLNGNDIGT 564
V HL KY +L Y ++ +DIGT
Sbjct: 1251 VSHLEKYRHNSELNYATIDESDIGT 1275
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 490 VLHLSKYAQFIKLKYLRLNGNDIGT 564
V HL KY +L Y ++ +DIGT
Sbjct: 1251 VSHLEKYRHNSELNYATIDESDIGT 1275
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,408
Number of Sequences: 5004
Number of extensions: 60434
Number of successful extensions: 182
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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