Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1b23
(748 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with... 32 0.38
L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with... 32 0.38
Z71264-1|CAA95828.1| 998|Caenorhabditis elegans Hypothetical pr... 30 2.0
AL021483-5|CAA16346.1| 255|Caenorhabditis elegans Hypothetical ... 29 4.6
AF106574-3|AAC78159.2| 427|Caenorhabditis elegans Hypothetical ... 29 4.6
AF016681-14|AAB66169.1| 1119|Caenorhabditis elegans Guanylyl cyc... 29 4.6
AF078157-14|AAG24081.1| 348|Caenorhabditis elegans Serpentine r... 28 6.1
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z81516-2|CAB04200.1| 223|Caenorhabditis elegans Hypothetical pr... 28 8.1
U80842-3|AAB37947.1| 325|Caenorhabditis elegans Serpentine rece... 28 8.1
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 28 8.1
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 28 8.1
>L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
b protein.
Length = 926
Score = 32.3 bits (70), Expect = 0.38
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +1
Query: 526 LKYLRLNGNDIGTKGGEYFADFLENNTSLERCDIGQ--SGQTLTSVAYIVTAL-RIDHGA 696
+K L L GN +G G A LE++ LERC +G+ + I+ AL + A
Sbjct: 441 MKALELRGNTLGIAAGNVIAKALESHPELERCLWSDLFTGRLKNEIPPILEALGKAMMTA 500
Query: 697 NQYLKVLDLS 726
+K LDLS
Sbjct: 501 GCKIKELDLS 510
>L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
a protein.
Length = 960
Score = 32.3 bits (70), Expect = 0.38
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +1
Query: 526 LKYLRLNGNDIGTKGGEYFADFLENNTSLERCDIGQ--SGQTLTSVAYIVTAL-RIDHGA 696
+K L L GN +G G A LE++ LERC +G+ + I+ AL + A
Sbjct: 478 MKALELRGNTLGIAAGNVIAKALESHPELERCLWSDLFTGRLKNEIPPILEALGKAMMTA 537
Query: 697 NQYLKVLDLS 726
+K LDLS
Sbjct: 538 GCKIKELDLS 547
>Z71264-1|CAA95828.1| 998|Caenorhabditis elegans Hypothetical
protein K07G5.1 protein.
Length = 998
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/80 (22%), Positives = 37/80 (46%)
Frame = +1
Query: 451 DLNIMNNELTDKSVLHLSKYAQFIKLKYLRLNGNDIGTKGGEYFADFLENNTSLERCDIG 630
+LN+ + L + ++ A LK L ++GN++G G + L+ N SL I
Sbjct: 555 ELNLSDCRLGAYLSVLINTLAATTTLKSLDISGNEMGNFGARILSKALQVNVSLRSVSID 614
Query: 631 QSGQTLTSVAYIVTALRIDH 690
+ + T+++++H
Sbjct: 615 NNHIGADGFVDLATSIKMNH 634
>AL021483-5|CAA16346.1| 255|Caenorhabditis elegans Hypothetical
protein Y38H8A.2a protein.
Length = 255
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -2
Query: 378 IAQVDFGHSKF*FANVTADGAYIKVCDPSVVSLKNVIPSQYQTARAVRVSLRK 220
I + G+ K N+ D + C VV++K IP+ YQT +A + S RK
Sbjct: 76 ILECGHGYCKKCIPNIKKDAHTLTKCP--VVAVKCRIPNWYQTGQAAKPSHRK 126
>AF106574-3|AAC78159.2| 427|Caenorhabditis elegans Hypothetical
protein E02D9.1a protein.
Length = 427
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 187 KREINEIRLNLFTERNSDGTGSLVLRGNDIFQRYNRRITDFD 312
K EI EIR N + N L +RG D F++++ R+ + D
Sbjct: 88 KSEIPEIRNNFKLKYNDVDGAILKVRGADDFEKFSERLENTD 129
>AF016681-14|AAB66169.1| 1119|Caenorhabditis elegans Guanylyl
cyclase protein 21 protein.
Length = 1119
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -3
Query: 563 VPISFPFNLKYLSLINCAYFDKCNTDLSVNSLFIILRSKTLDLPFTSTFFN 411
+ + FP + YL+ CA KC+ + ++N+ I D ST N
Sbjct: 26 ITVYFPLKVDYLAPFGCATGTKCDDEAALNNGTIAALGLMRDCYIQSTILN 76
>AF078157-14|AAG24081.1| 348|Caenorhabditis elegans Serpentine
receptor, class h protein92 protein.
Length = 348
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -3
Query: 239 SEFLSVNKFNLISLISLLSKGAGVPVIFFKIFLVS-QMHF--FFFVF 108
SE+ S N +S S LS G+ V+ F I LVS HF F+ +F
Sbjct: 6 SEYYSTNYSQCVSDDSFLSSWKGLVVVCFSIQLVSIPCHFLTFYLIF 52
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical
protein ZC101.2f protein.
Length = 2389
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 232 NSDGTGSLVLRGNDIFQRYNRR 297
NSD + ++LRGNDI +Y R
Sbjct: 820 NSDQSADVILRGNDIALQYKHR 841
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical
protein ZC101.2e protein.
Length = 3375
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 232 NSDGTGSLVLRGNDIFQRYNRR 297
NSD + ++LRGNDI +Y R
Sbjct: 820 NSDQSADVILRGNDIALQYKHR 841
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical
protein ZC101.2c protein.
Length = 2295
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 232 NSDGTGSLVLRGNDIFQRYNRR 297
NSD + ++LRGNDI +Y R
Sbjct: 820 NSDQSADVILRGNDIALQYKHR 841
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical
protein ZC101.2a protein.
Length = 2482
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 232 NSDGTGSLVLRGNDIFQRYNRR 297
NSD + ++LRGNDI +Y R
Sbjct: 820 NSDQSADVILRGNDIALQYKHR 841
>Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical
protein ZC101.2b protein.
Length = 1160
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 232 NSDGTGSLVLRGNDIFQRYNRR 297
NSD + ++LRGNDI +Y R
Sbjct: 820 NSDQSADVILRGNDIALQYKHR 841
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical
protein ZC101.2f protein.
Length = 2389
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 232 NSDGTGSLVLRGNDIFQRYNRR 297
NSD + ++LRGNDI +Y R
Sbjct: 820 NSDQSADVILRGNDIALQYKHR 841
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical
protein ZC101.2e protein.
Length = 3375
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 232 NSDGTGSLVLRGNDIFQRYNRR 297
NSD + ++LRGNDI +Y R
Sbjct: 820 NSDQSADVILRGNDIALQYKHR 841
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical
protein ZC101.2c protein.
Length = 2295
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 232 NSDGTGSLVLRGNDIFQRYNRR 297
NSD + ++LRGNDI +Y R
Sbjct: 820 NSDQSADVILRGNDIALQYKHR 841
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical
protein ZC101.2a protein.
Length = 2482
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 232 NSDGTGSLVLRGNDIFQRYNRR 297
NSD + ++LRGNDI +Y R
Sbjct: 820 NSDQSADVILRGNDIALQYKHR 841
>Z81516-2|CAB04200.1| 223|Caenorhabditis elegans Hypothetical
protein F26H9.4 protein.
Length = 223
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 644 VCPDWPISHRSKLVLFSRKSAKYSPPFVPISF 549
VCP S R + + ++KS KYS P I+F
Sbjct: 182 VCPSGVSSTRLRAAIMNKKSIKYSTPDEVINF 213
>U80842-3|AAB37947.1| 325|Caenorhabditis elegans Serpentine
receptor, class i protein48 protein.
Length = 325
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 215 FNLISLISLLSKGAGVPVIFFKIFLVSQMHFFFFVFGI 102
FN++S IS + +I FK + + FF VF +
Sbjct: 15 FNIVSFISFFLNCTTILLIIFKSYKFNNFRFFVLVFQV 52
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 565 KGGEYFADFLENNTSLERCDIGQSGQTLTSVAYIVTALRIDHGANQYLKVLDLSRV 732
KG E+ NN + D G+T+ ++A+I + I + +L ++ LS V
Sbjct: 372 KGLEWMVSLFNNNLNGILADEMGLGKTIQTIAFITYLMEIKKTSGPFLVIVPLSTV 427
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 232 NSDGTGSLVLRGNDIFQRYNRR 297
NSD + ++LRGNDI +Y R
Sbjct: 819 NSDQSADVILRGNDIALQYKHR 840
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,965,250
Number of Sequences: 27780
Number of extensions: 327165
Number of successful extensions: 889
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -