Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1b22
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    28   1.2  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   6.4  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    25   8.4  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   8.4  

>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 121 DSIVEYIIIFCIWLGWFVRVRLQRNVNYYFL 29
           D+ VEY+   CIWL   +    +RN  YYF+
Sbjct: 202 DNCVEYLDHHCIWLNTCIG---RRNYRYYFI 229


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 203 PCISACFEFWQFILIQFLFYFM 138
           PC+ ACF   Q IL+ FL +F+
Sbjct: 825 PCVPACFNSQQ-ILVTFLKFFI 845


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 104 YYYILHLAWMVCT 66
           Y Y+L+ AW+VCT
Sbjct: 41  YLYLLYKAWIVCT 53


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -1

Query: 231 ALRPVHMSC--SLYFGMFRVLAVYFDSIFILFYVMLFIMI 118
           A RP+ +S   S++   ++  AV F   F+LF+V + IMI
Sbjct: 37  AYRPLELSPTPSIFARNYQRNAVDFTGFFVLFWVAVSIMI 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,645
Number of Sequences: 5004
Number of extensions: 54060
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)